Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_386 and Ac3H11_387 are separated by 250 nucleotides Ac3H11_387 and Ac3H11_388 are separated by 122 nucleotides
Ac3H11_386 - ATP-dependent RNA helicase RhlE, at 65,124 to 66,935
_386
Ac3H11_387 - ABC transporter ATP-binding protein, at 67,186 to 68,847
_387
Ac3H11_388 - Thymidine phosphorylase (EC 2.4.2.4), at 68,970 to 71,456
_388
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 66.646 kb on - strand, within Ac3H11_386 at 67.125 kb on + strand at 67.125 kb on + strand at 67.172 kb on + strand at 67.172 kb on + strand at 68.845 kb on + strand at 68.845 kb on + strand at 68.856 kb on + strand at 68.895 kb on + strand at 68.895 kb on + strand at 68.961 kb on - strand at 69.117 kb on + strand at 69.117 kb on + strand at 69.118 kb on - strand at 69.118 kb on - strand at 69.153 kb on + strand at 69.348 kb on - strand, within Ac3H11_388 at 69.348 kb on - strand, within Ac3H11_388 at 69.348 kb on - strand, within Ac3H11_388 at 69.417 kb on + strand, within Ac3H11_388 at 69.417 kb on + strand, within Ac3H11_388 at 69.417 kb on + strand, within Ac3H11_388 at 69.417 kb on + strand, within Ac3H11_388 at 69.418 kb on - strand, within Ac3H11_388 at 69.418 kb on - strand, within Ac3H11_388 at 69.418 kb on - strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.421 kb on + strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.422 kb on - strand, within Ac3H11_388 at 69.520 kb on + strand, within Ac3H11_388 at 69.521 kb on - strand, within Ac3H11_388 at 69.521 kb on - strand, within Ac3H11_388 at 69.528 kb on + strand, within Ac3H11_388 at 69.528 kb on + strand, within Ac3H11_388 at 69.529 kb on - strand, within Ac3H11_388 at 69.579 kb on + strand, within Ac3H11_388 at 69.579 kb on + strand, within Ac3H11_388 at 69.580 kb on - strand, within Ac3H11_388 at 69.580 kb on - strand, within Ac3H11_388 at 69.580 kb on - strand, within Ac3H11_388 at 69.639 kb on + strand, within Ac3H11_388 at 69.640 kb on - strand, within Ac3H11_388 at 69.654 kb on + strand, within Ac3H11_388 at 69.654 kb on + strand, within Ac3H11_388 at 69.655 kb on - strand, within Ac3H11_388 at 69.655 kb on - strand, within Ac3H11_388 at 69.655 kb on - strand, within Ac3H11_388 at 69.675 kb on + strand, within Ac3H11_388 at 69.688 kb on - strand, within Ac3H11_388 at 69.696 kb on + strand, within Ac3H11_388
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 66,646 - Ac3H11_386 0.84 -0.2 67,125 + +2.5 67,125 + +1.0 67,172 + -0.6 67,172 + -0.9 68,845 + -2.8 68,845 + -0.0 68,856 + -1.0 68,895 + +0.1 68,895 + +0.3 68,961 - +0.1 69,117 + -2.8 69,117 + +1.4 69,118 - -0.4 69,118 - -1.1 69,153 + +0.5 69,348 - Ac3H11_388 0.15 -2.2 69,348 - Ac3H11_388 0.15 +1.3 69,348 - Ac3H11_388 0.15 -1.7 69,417 + Ac3H11_388 0.18 -0.0 69,417 + Ac3H11_388 0.18 -2.7 69,417 + Ac3H11_388 0.18 +0.8 69,417 + Ac3H11_388 0.18 -0.1 69,418 - Ac3H11_388 0.18 -0.9 69,418 - Ac3H11_388 0.18 -0.5 69,418 - Ac3H11_388 0.18 -0.0 69,421 + Ac3H11_388 0.18 +0.4 69,421 + Ac3H11_388 0.18 +0.1 69,421 + Ac3H11_388 0.18 -1.8 69,421 + Ac3H11_388 0.18 -2.9 69,421 + Ac3H11_388 0.18 -0.7 69,421 + Ac3H11_388 0.18 +1.1 69,421 + Ac3H11_388 0.18 +0.9 69,421 + Ac3H11_388 0.18 +1.3 69,421 + Ac3H11_388 0.18 +1.9 69,422 - Ac3H11_388 0.18 +1.6 69,422 - Ac3H11_388 0.18 +0.4 69,422 - Ac3H11_388 0.18 -0.2 69,422 - Ac3H11_388 0.18 +0.1 69,422 - Ac3H11_388 0.18 +1.4 69,422 - Ac3H11_388 0.18 -0.5 69,422 - Ac3H11_388 0.18 +0.8 69,422 - Ac3H11_388 0.18 -0.9 69,422 - Ac3H11_388 0.18 -0.1 69,422 - Ac3H11_388 0.18 -0.7 69,520 + Ac3H11_388 0.22 -2.9 69,521 - Ac3H11_388 0.22 +2.7 69,521 - Ac3H11_388 0.22 +2.0 69,528 + Ac3H11_388 0.22 +1.7 69,528 + Ac3H11_388 0.22 +2.1 69,529 - Ac3H11_388 0.22 -0.5 69,579 + Ac3H11_388 0.24 -0.3 69,579 + Ac3H11_388 0.24 +0.9 69,580 - Ac3H11_388 0.25 +0.1 69,580 - Ac3H11_388 0.25 -1.3 69,580 - Ac3H11_388 0.25 -3.5 69,639 + Ac3H11_388 0.27 -1.5 69,640 - Ac3H11_388 0.27 -2.0 69,654 + Ac3H11_388 0.28 -2.3 69,654 + Ac3H11_388 0.28 +1.0 69,655 - Ac3H11_388 0.28 +0.5 69,655 - Ac3H11_388 0.28 +1.9 69,655 - Ac3H11_388 0.28 -0.6 69,675 + Ac3H11_388 0.28 -0.2 69,688 - Ac3H11_388 0.29 +1.1 69,696 + Ac3H11_388 0.29 -0.9
Or see this region's nucleotide sequence