Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3466 and Ac3H11_3467 are separated by 3 nucleotides Ac3H11_3467 and Ac3H11_3468 are separated by 23 nucleotides Ac3H11_3468 and Ac3H11_3469 overlap by 4 nucleotides Ac3H11_3469 and Ac3H11_3470 overlap by 4 nucleotides Ac3H11_3470 and Ac3H11_3471 are separated by 44 nucleotides Ac3H11_3471 and Ac3H11_3472 are separated by 2 nucleotides Ac3H11_3472 and Ac3H11_3473 overlap by 4 nucleotides Ac3H11_3473 and Ac3H11_3474 overlap by 7 nucleotides
Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156
_3466
Ac3H11_3467 - hypothetical protein, at 20,160 to 20,420
_3467
Ac3H11_3468 - COG1896: Predicted hydrolases of HD superfamily, at 20,444 to 21,097
_3468
Ac3H11_3469 - hypothetical protein, at 21,094 to 21,453
_3469
Ac3H11_3470 - hypothetical protein, at 21,450 to 21,719
_3470
Ac3H11_3471 - hypothetical protein, at 21,764 to 21,901
_3471
Ac3H11_3472 - hypothetical protein, at 21,904 to 22,233
_3472
Ac3H11_3473 - hypothetical protein, at 22,230 to 22,364
_3473
Ac3H11_3474 - hypothetical protein, at 22,358 to 22,585
_3474
Position (kb) 21
22 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 20.161 kb on + strand at 20.161 kb on + strand at 20.260 kb on + strand, within Ac3H11_3467 at 20.510 kb on + strand, within Ac3H11_3468 at 20.510 kb on + strand, within Ac3H11_3468 at 20.510 kb on + strand, within Ac3H11_3468 at 20.661 kb on + strand, within Ac3H11_3468 at 20.661 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.705 kb on + strand, within Ac3H11_3468 at 20.732 kb on + strand, within Ac3H11_3468 at 20.732 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 20.847 kb on + strand, within Ac3H11_3468 at 21.021 kb on + strand, within Ac3H11_3468 at 21.021 kb on + strand, within Ac3H11_3468 at 21.054 kb on + strand at 21.054 kb on + strand at 21.054 kb on + strand at 21.054 kb on + strand at 21.087 kb on + strand at 21.087 kb on + strand at 21.218 kb on + strand, within Ac3H11_3469 at 21.218 kb on + strand, within Ac3H11_3469 at 21.224 kb on + strand, within Ac3H11_3469 at 21.628 kb on + strand, within Ac3H11_3470 at 21.741 kb on + strand at 21.741 kb on + strand at 21.747 kb on + strand at 21.747 kb on + strand at 21.747 kb on + strand at 21.747 kb on + strand at 21.873 kb on + strand, within Ac3H11_3471 at 21.873 kb on + strand, within Ac3H11_3471 at 21.873 kb on + strand, within Ac3H11_3471 at 21.922 kb on + strand at 21.922 kb on + strand at 21.989 kb on + strand, within Ac3H11_3472 at 21.989 kb on + strand, within Ac3H11_3472 at 21.989 kb on + strand, within Ac3H11_3472 at 21.989 kb on + strand, within Ac3H11_3472 at 21.989 kb on + strand, within Ac3H11_3472 at 21.992 kb on + strand, within Ac3H11_3472 at 22.378 kb on + strand at 22.378 kb on + strand at 22.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 20,161 + +1.8 20,161 + -0.7 20,260 + Ac3H11_3467 0.38 -2.4 20,510 + Ac3H11_3468 0.10 +0.6 20,510 + Ac3H11_3468 0.10 -0.4 20,510 + Ac3H11_3468 0.10 +0.2 20,661 + Ac3H11_3468 0.33 -2.5 20,661 + Ac3H11_3468 0.33 +0.2 20,705 + Ac3H11_3468 0.40 +1.3 20,705 + Ac3H11_3468 0.40 +0.5 20,705 + Ac3H11_3468 0.40 -1.7 20,732 + Ac3H11_3468 0.44 +1.5 20,732 + Ac3H11_3468 0.44 +0.1 20,847 + Ac3H11_3468 0.62 -2.2 20,847 + Ac3H11_3468 0.62 -2.3 20,847 + Ac3H11_3468 0.62 -1.2 20,847 + Ac3H11_3468 0.62 +0.2 20,847 + Ac3H11_3468 0.62 +0.4 20,847 + Ac3H11_3468 0.62 +0.8 21,021 + Ac3H11_3468 0.88 +0.9 21,021 + Ac3H11_3468 0.88 -1.1 21,054 + +1.7 21,054 + +0.6 21,054 + +1.4 21,054 + +1.0 21,087 + -2.2 21,087 + -1.5 21,218 + Ac3H11_3469 0.34 +0.8 21,218 + Ac3H11_3469 0.34 -0.8 21,224 + Ac3H11_3469 0.36 -1.1 21,628 + Ac3H11_3470 0.66 -0.5 21,741 + +1.8 21,741 + +1.3 21,747 + -0.1 21,747 + -2.5 21,747 + +0.2 21,747 + +0.1 21,873 + Ac3H11_3471 0.79 -0.4 21,873 + Ac3H11_3471 0.79 +1.0 21,873 + Ac3H11_3471 0.79 +1.4 21,922 + +0.2 21,922 + -0.3 21,989 + Ac3H11_3472 0.26 +1.0 21,989 + Ac3H11_3472 0.26 +0.7 21,989 + Ac3H11_3472 0.26 -4.2 21,989 + Ac3H11_3472 0.26 -0.1 21,989 + Ac3H11_3472 0.26 -1.3 21,992 + Ac3H11_3472 0.27 -2.5 22,378 + -0.8 22,378 + +0.9 22,378 + -3.0
Or see this region's nucleotide sequence