Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3429 and Ac3H11_3430 are separated by 144 nucleotides Ac3H11_3430 and Ac3H11_3431 overlap by 4 nucleotides Ac3H11_3431 and Ac3H11_3432 overlap by 4 nucleotides
Ac3H11_3429 - Extracellular ligand-binding receptor, at 111,739 to 112,896
_3429
Ac3H11_3430 - ABC-type branched-chain amino acid transport systems, ATPase component, at 113,041 to 113,790
_3430
Ac3H11_3431 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 113,787 to 114,569
_3431
Ac3H11_3432 - putative permease component of branched-chain amino acid transport system, at 114,566 to 116,473
_3432
Position (kb) 113
114
115 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 112.787 kb on - strand at 112.913 kb on + strand at 112.924 kb on - strand at 112.924 kb on - strand at 113.054 kb on + strand at 113.054 kb on + strand at 113.132 kb on + strand, within Ac3H11_3430 at 113.132 kb on + strand, within Ac3H11_3430 at 113.133 kb on - strand, within Ac3H11_3430 at 113.133 kb on - strand, within Ac3H11_3430 at 113.705 kb on + strand, within Ac3H11_3430 at 113.705 kb on + strand, within Ac3H11_3430 at 113.706 kb on - strand, within Ac3H11_3430 at 113.726 kb on + strand at 113.766 kb on + strand at 113.985 kb on - strand, within Ac3H11_3431 at 114.604 kb on + strand at 114.605 kb on - strand at 114.605 kb on - strand at 114.605 kb on - strand at 114.861 kb on + strand, within Ac3H11_3432 at 114.861 kb on + strand, within Ac3H11_3432 at 114.862 kb on - strand, within Ac3H11_3432 at 114.862 kb on - strand, within Ac3H11_3432 at 114.862 kb on - strand, within Ac3H11_3432 at 114.862 kb on - strand, within Ac3H11_3432 at 114.862 kb on - strand, within Ac3H11_3432 at 114.862 kb on - strand, within Ac3H11_3432 at 114.984 kb on + strand, within Ac3H11_3432 at 115.056 kb on + strand, within Ac3H11_3432 at 115.057 kb on - strand, within Ac3H11_3432 at 115.057 kb on - strand, within Ac3H11_3432 at 115.057 kb on - strand, within Ac3H11_3432 at 115.057 kb on - strand, within Ac3H11_3432 at 115.057 kb on - strand, within Ac3H11_3432 at 115.059 kb on + strand, within Ac3H11_3432 at 115.059 kb on + strand, within Ac3H11_3432 at 115.059 kb on + strand, within Ac3H11_3432 at 115.059 kb on + strand, within Ac3H11_3432 at 115.059 kb on + strand, within Ac3H11_3432 at 115.059 kb on + strand, within Ac3H11_3432 at 115.059 kb on + strand, within Ac3H11_3432 at 115.060 kb on - strand, within Ac3H11_3432 at 115.060 kb on - strand, within Ac3H11_3432 at 115.060 kb on - strand, within Ac3H11_3432 at 115.140 kb on + strand, within Ac3H11_3432 at 115.140 kb on + strand, within Ac3H11_3432 at 115.141 kb on - strand, within Ac3H11_3432 at 115.191 kb on + strand, within Ac3H11_3432 at 115.192 kb on - strand, within Ac3H11_3432 at 115.192 kb on - strand, within Ac3H11_3432 at 115.192 kb on - strand, within Ac3H11_3432 at 115.318 kb on - strand, within Ac3H11_3432 at 115.318 kb on - strand, within Ac3H11_3432 at 115.318 kb on - strand, within Ac3H11_3432 at 115.318 kb on - strand, within Ac3H11_3432 at 115.336 kb on - strand, within Ac3H11_3432 at 115.440 kb on + strand, within Ac3H11_3432 at 115.441 kb on - strand, within Ac3H11_3432 at 115.555 kb on - strand, within Ac3H11_3432
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 112,787 - -0.8 112,913 + +0.4 112,924 - +0.2 112,924 - +2.9 113,054 + -0.3 113,054 + -2.5 113,132 + Ac3H11_3430 0.12 +1.0 113,132 + Ac3H11_3430 0.12 +0.5 113,133 - Ac3H11_3430 0.12 -1.3 113,133 - Ac3H11_3430 0.12 +0.1 113,705 + Ac3H11_3430 0.89 +0.2 113,705 + Ac3H11_3430 0.89 -0.2 113,706 - Ac3H11_3430 0.89 +0.7 113,726 + +0.4 113,766 + +1.6 113,985 - Ac3H11_3431 0.25 -3.6 114,604 + -2.0 114,605 - -0.6 114,605 - +0.5 114,605 - -0.4 114,861 + Ac3H11_3432 0.15 +0.3 114,861 + Ac3H11_3432 0.15 +0.9 114,862 - Ac3H11_3432 0.16 -0.2 114,862 - Ac3H11_3432 0.16 -2.3 114,862 - Ac3H11_3432 0.16 -2.0 114,862 - Ac3H11_3432 0.16 -0.9 114,862 - Ac3H11_3432 0.16 +1.7 114,862 - Ac3H11_3432 0.16 +0.2 114,984 + Ac3H11_3432 0.22 +0.6 115,056 + Ac3H11_3432 0.26 +0.4 115,057 - Ac3H11_3432 0.26 +0.1 115,057 - Ac3H11_3432 0.26 +0.1 115,057 - Ac3H11_3432 0.26 -1.0 115,057 - Ac3H11_3432 0.26 +0.4 115,057 - Ac3H11_3432 0.26 +0.7 115,059 + Ac3H11_3432 0.26 -0.4 115,059 + Ac3H11_3432 0.26 -1.6 115,059 + Ac3H11_3432 0.26 -1.3 115,059 + Ac3H11_3432 0.26 +1.0 115,059 + Ac3H11_3432 0.26 +1.3 115,059 + Ac3H11_3432 0.26 +0.0 115,059 + Ac3H11_3432 0.26 -0.6 115,060 - Ac3H11_3432 0.26 -3.2 115,060 - Ac3H11_3432 0.26 +0.9 115,060 - Ac3H11_3432 0.26 +0.1 115,140 + Ac3H11_3432 0.30 +0.0 115,140 + Ac3H11_3432 0.30 +1.1 115,141 - Ac3H11_3432 0.30 -3.3 115,191 + Ac3H11_3432 0.33 +0.8 115,192 - Ac3H11_3432 0.33 +0.2 115,192 - Ac3H11_3432 0.33 -3.0 115,192 - Ac3H11_3432 0.33 +1.3 115,318 - Ac3H11_3432 0.39 +1.5 115,318 - Ac3H11_3432 0.39 +1.7 115,318 - Ac3H11_3432 0.39 -0.2 115,318 - Ac3H11_3432 0.39 -0.1 115,336 - Ac3H11_3432 0.40 +1.2 115,440 + Ac3H11_3432 0.46 +0.6 115,441 - Ac3H11_3432 0.46 +0.0 115,555 - Ac3H11_3432 0.52 -3.2
Or see this region's nucleotide sequence