Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3357

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3356 and Ac3H11_3357 are separated by 56 nucleotidesAc3H11_3357 and Ac3H11_3358 are separated by 160 nucleotides Ac3H11_3356 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 36,690 to 37,811 _3356 Ac3H11_3357 - Zn-dependent protease with chaperone function PA4632, at 37,868 to 38,722 _3357 Ac3H11_3358 - AmpG permease, at 38,883 to 40,379 _3358 Position (kb) 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 36.870 kb on + strand, within Ac3H11_3356at 36.871 kb on - strand, within Ac3H11_3356at 36.939 kb on + strand, within Ac3H11_3356at 36.939 kb on + strand, within Ac3H11_3356at 36.939 kb on + strand, within Ac3H11_3356at 36.939 kb on + strand, within Ac3H11_3356at 36.939 kb on + strand, within Ac3H11_3356at 36.939 kb on + strand, within Ac3H11_3356at 36.939 kb on + strand, within Ac3H11_3356at 36.940 kb on - strand, within Ac3H11_3356at 36.940 kb on - strand, within Ac3H11_3356at 36.940 kb on - strand, within Ac3H11_3356at 36.940 kb on - strand, within Ac3H11_3356at 36.940 kb on - strand, within Ac3H11_3356at 36.940 kb on - strand, within Ac3H11_3356at 36.951 kb on + strandat 36.952 kb on - strand, within Ac3H11_3356at 36.952 kb on - strand, within Ac3H11_3356at 36.952 kb on - strand, within Ac3H11_3356at 37.065 kb on + strand, within Ac3H11_3356at 37.065 kb on + strand, within Ac3H11_3356at 37.065 kb on + strand, within Ac3H11_3356at 37.068 kb on + strand, within Ac3H11_3356at 37.068 kb on + strand, within Ac3H11_3356at 37.068 kb on + strand, within Ac3H11_3356at 37.068 kb on + strand, within Ac3H11_3356at 37.069 kb on - strand, within Ac3H11_3356at 37.069 kb on - strand, within Ac3H11_3356at 37.069 kb on - strand, within Ac3H11_3356at 37.069 kb on - strand, within Ac3H11_3356at 37.069 kb on - strand, within Ac3H11_3356at 37.069 kb on - strand, within Ac3H11_3356at 37.149 kb on + strand, within Ac3H11_3356at 37.149 kb on + strand, within Ac3H11_3356at 37.150 kb on - strand, within Ac3H11_3356at 37.150 kb on - strand, within Ac3H11_3356at 37.150 kb on - strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.152 kb on + strand, within Ac3H11_3356at 37.153 kb on - strand, within Ac3H11_3356at 37.153 kb on - strand, within Ac3H11_3356at 37.153 kb on - strand, within Ac3H11_3356at 37.153 kb on - strand, within Ac3H11_3356at 37.153 kb on - strand, within Ac3H11_3356at 37.281 kb on + strand, within Ac3H11_3356at 37.282 kb on - strand, within Ac3H11_3356at 37.371 kb on + strand, within Ac3H11_3356at 37.371 kb on + strand, within Ac3H11_3356at 37.371 kb on + strand, within Ac3H11_3356at 37.371 kb on + strand, within Ac3H11_3356at 37.371 kb on + strand, within Ac3H11_3356at 37.388 kb on + strand, within Ac3H11_3356at 37.388 kb on + strand, within Ac3H11_3356at 37.388 kb on + strand, within Ac3H11_3356at 37.388 kb on + strand, within Ac3H11_3356at 37.388 kb on + strand, within Ac3H11_3356at 37.388 kb on + strand, within Ac3H11_3356at 37.389 kb on - strand, within Ac3H11_3356at 37.389 kb on - strand, within Ac3H11_3356at 37.389 kb on - strand, within Ac3H11_3356at 37.389 kb on - strand, within Ac3H11_3356at 37.389 kb on - strand, within Ac3H11_3356at 37.389 kb on - strand, within Ac3H11_3356at 37.662 kb on + strand, within Ac3H11_3356at 37.662 kb on + strand, within Ac3H11_3356at 37.663 kb on - strand, within Ac3H11_3356at 37.767 kb on + strandat 37.767 kb on + strandat 37.767 kb on + strandat 37.767 kb on + strandat 37.767 kb on + strandat 37.768 kb on - strandat 37.893 kb on + strandat 37.893 kb on + strandat 37.894 kb on - strandat 37.894 kb on - strandat 37.894 kb on - strandat 38.322 kb on + strand, within Ac3H11_3357at 38.322 kb on + strand, within Ac3H11_3357at 38.322 kb on + strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.323 kb on - strand, within Ac3H11_3357at 38.532 kb on + strand, within Ac3H11_3357at 38.722 kb on + strandat 38.722 kb on + strandat 38.722 kb on + strandat 38.722 kb on + strandat 38.722 kb on + strandat 38.722 kb on + strandat 38.722 kb on + strandat 38.722 kb on + strandat 38.722 kb on + strandat 38.723 kb on - strandat 38.723 kb on - strandat 38.723 kb on - strandat 38.723 kb on - strandat 38.751 kb on + strandat 38.752 kb on - strandat 38.752 kb on - strandat 38.818 kb on + strandat 38.819 kb on - strandat 38.819 kb on - strandat 38.832 kb on - strandat 38.832 kb on - strandat 38.832 kb on - strandat 38.832 kb on - strandat 38.834 kb on + strandat 38.834 kb on + strandat 38.834 kb on + strandat 38.835 kb on - strandat 39.030 kb on + strandat 39.031 kb on - strandat 39.031 kb on - strandat 39.180 kb on + strand, within Ac3H11_3358at 39.180 kb on + strand, within Ac3H11_3358at 39.181 kb on - strand, within Ac3H11_3358at 39.459 kb on + strand, within Ac3H11_3358at 39.571 kb on + strand, within Ac3H11_3358at 39.627 kb on + strand, within Ac3H11_3358at 39.628 kb on - strand, within Ac3H11_3358at 39.628 kb on - strand, within Ac3H11_3358

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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36,870 + Ac3H11_3356 0.16 +0.9
36,871 - Ac3H11_3356 0.16 +1.2
36,939 + Ac3H11_3356 0.22 +1.6
36,939 + Ac3H11_3356 0.22 +0.2
36,939 + Ac3H11_3356 0.22 +0.7
36,939 + Ac3H11_3356 0.22 +1.0
36,939 + Ac3H11_3356 0.22 -4.1
36,939 + Ac3H11_3356 0.22 -1.2
36,939 + Ac3H11_3356 0.22 -1.6
36,940 - Ac3H11_3356 0.22 -2.6
36,940 - Ac3H11_3356 0.22 +1.8
36,940 - Ac3H11_3356 0.22 -0.6
36,940 - Ac3H11_3356 0.22 -0.8
36,940 - Ac3H11_3356 0.22 +0.5
36,940 - Ac3H11_3356 0.22 +0.7
36,951 + +0.6
36,952 - Ac3H11_3356 0.23 +0.8
36,952 - Ac3H11_3356 0.23 +0.2
36,952 - Ac3H11_3356 0.23 +2.0
37,065 + Ac3H11_3356 0.33 -0.7
37,065 + Ac3H11_3356 0.33 +0.3
37,065 + Ac3H11_3356 0.33 -0.3
37,068 + Ac3H11_3356 0.34 -0.9
37,068 + Ac3H11_3356 0.34 -0.4
37,068 + Ac3H11_3356 0.34 -0.8
37,068 + Ac3H11_3356 0.34 -0.4
37,069 - Ac3H11_3356 0.34 -0.4
37,069 - Ac3H11_3356 0.34 -2.6
37,069 - Ac3H11_3356 0.34 -2.9
37,069 - Ac3H11_3356 0.34 +1.1
37,069 - Ac3H11_3356 0.34 +0.8
37,069 - Ac3H11_3356 0.34 -0.7
37,149 + Ac3H11_3356 0.41 -1.3
37,149 + Ac3H11_3356 0.41 -1.5
37,150 - Ac3H11_3356 0.41 -0.4
37,150 - Ac3H11_3356 0.41 -2.5
37,150 - Ac3H11_3356 0.41 +3.0
37,152 + Ac3H11_3356 0.41 -1.2
37,152 + Ac3H11_3356 0.41 -0.2
37,152 + Ac3H11_3356 0.41 +2.2
37,152 + Ac3H11_3356 0.41 +0.8
37,152 + Ac3H11_3356 0.41 +0.2
37,152 + Ac3H11_3356 0.41 +2.2
37,152 + Ac3H11_3356 0.41 -0.4
37,152 + Ac3H11_3356 0.41 -1.8
37,153 - Ac3H11_3356 0.41 +0.7
37,153 - Ac3H11_3356 0.41 -1.3
37,153 - Ac3H11_3356 0.41 +2.3
37,153 - Ac3H11_3356 0.41 -2.7
37,153 - Ac3H11_3356 0.41 -0.3
37,281 + Ac3H11_3356 0.53 +0.1
37,282 - Ac3H11_3356 0.53 -1.4
37,371 + Ac3H11_3356 0.61 -0.2
37,371 + Ac3H11_3356 0.61 +0.9
37,371 + Ac3H11_3356 0.61 +0.6
37,371 + Ac3H11_3356 0.61 -2.6
37,371 + Ac3H11_3356 0.61 +0.1
37,388 + Ac3H11_3356 0.62 +1.3
37,388 + Ac3H11_3356 0.62 +0.2
37,388 + Ac3H11_3356 0.62 +0.4
37,388 + Ac3H11_3356 0.62 +1.3
37,388 + Ac3H11_3356 0.62 -0.8
37,388 + Ac3H11_3356 0.62 +1.9
37,389 - Ac3H11_3356 0.62 +1.0
37,389 - Ac3H11_3356 0.62 +0.3
37,389 - Ac3H11_3356 0.62 +2.5
37,389 - Ac3H11_3356 0.62 +1.0
37,389 - Ac3H11_3356 0.62 +2.6
37,389 - Ac3H11_3356 0.62 -0.1
37,662 + Ac3H11_3356 0.87 -4.2
37,662 + Ac3H11_3356 0.87 +1.5
37,663 - Ac3H11_3356 0.87 -2.0
37,767 + +1.9
37,767 + -2.4
37,767 + +1.3
37,767 + -3.2
37,767 + -1.4
37,768 - +1.4
37,893 + +0.5
37,893 + +1.9
37,894 - +0.7
37,894 - -2.1
37,894 - -0.1
38,322 + Ac3H11_3357 0.53 -1.7
38,322 + Ac3H11_3357 0.53 +0.3
38,322 + Ac3H11_3357 0.53 -1.7
38,323 - Ac3H11_3357 0.53 +0.6
38,323 - Ac3H11_3357 0.53 +0.2
38,323 - Ac3H11_3357 0.53 -1.4
38,323 - Ac3H11_3357 0.53 -1.0
38,323 - Ac3H11_3357 0.53 -0.7
38,323 - Ac3H11_3357 0.53 -0.4
38,323 - Ac3H11_3357 0.53 -0.5
38,323 - Ac3H11_3357 0.53 +1.5
38,532 + Ac3H11_3357 0.78 +0.0
38,722 + -1.8
38,722 + +0.8
38,722 + +0.2
38,722 + +0.5
38,722 + +0.0
38,722 + +0.1
38,722 + +0.6
38,722 + -4.2
38,722 + -0.6
38,723 - -0.1
38,723 - +2.9
38,723 - +0.3
38,723 - +0.2
38,751 + -1.1
38,752 - -0.7
38,752 - -0.1
38,818 + -0.4
38,819 - +0.5
38,819 - +1.8
38,832 - +1.4
38,832 - -0.5
38,832 - +1.7
38,832 - +1.4
38,834 + -0.1
38,834 + -1.5
38,834 + +0.0
38,835 - +0.5
39,030 + -2.9
39,031 - -0.7
39,031 - -1.6
39,180 + Ac3H11_3358 0.20 -1.7
39,180 + Ac3H11_3358 0.20 +1.9
39,181 - Ac3H11_3358 0.20 -0.0
39,459 + Ac3H11_3358 0.38 -0.6
39,571 + Ac3H11_3358 0.46 +2.6
39,627 + Ac3H11_3358 0.50 -0.4
39,628 - Ac3H11_3358 0.50 +1.4
39,628 - Ac3H11_3358 0.50 -3.3

Or see this region's nucleotide sequence