Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3198 and Ac3H11_3199 are separated by 24 nucleotides
Ac3H11_3198 - Periplasmic binding protein, at 102,593 to 103,546
_3198
Ac3H11_3199 - Periplasmic binding protein, at 103,571 to 104,506
_3199
Position (kb) 102
103
104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 101.617 kb on + strand at 101.617 kb on + strand at 101.648 kb on - strand at 101.648 kb on - strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.669 kb on - strand at 101.834 kb on - strand at 102.551 kb on - strand at 102.551 kb on - strand at 102.551 kb on - strand at 102.679 kb on - strand at 102.679 kb on - strand at 102.679 kb on - strand at 102.679 kb on - strand at 103.071 kb on + strand, within Ac3H11_3198 at 103.095 kb on + strand, within Ac3H11_3198 at 103.099 kb on + strand, within Ac3H11_3198 at 103.100 kb on - strand, within Ac3H11_3198 at 103.100 kb on - strand, within Ac3H11_3198 at 103.100 kb on - strand, within Ac3H11_3198 at 103.100 kb on - strand, within Ac3H11_3198 at 103.110 kb on + strand, within Ac3H11_3198 at 103.161 kb on + strand, within Ac3H11_3198 at 103.161 kb on + strand, within Ac3H11_3198 at 103.296 kb on + strand, within Ac3H11_3198 at 103.296 kb on + strand, within Ac3H11_3198 at 103.297 kb on - strand, within Ac3H11_3198 at 103.297 kb on - strand, within Ac3H11_3198 at 103.572 kb on + strand at 103.572 kb on + strand at 103.656 kb on + strand at 103.657 kb on - strand at 103.657 kb on - strand at 103.657 kb on - strand at 103.657 kb on - strand at 103.866 kb on + strand, within Ac3H11_3199 at 103.887 kb on + strand, within Ac3H11_3199 at 103.887 kb on + strand, within Ac3H11_3199 at 103.888 kb on - strand, within Ac3H11_3199 at 103.890 kb on + strand, within Ac3H11_3199 at 103.890 kb on + strand, within Ac3H11_3199 at 103.890 kb on + strand, within Ac3H11_3199 at 103.891 kb on - strand, within Ac3H11_3199 at 103.891 kb on - strand, within Ac3H11_3199 at 104.046 kb on + strand, within Ac3H11_3199 at 104.046 kb on + strand, within Ac3H11_3199 at 104.046 kb on + strand, within Ac3H11_3199 at 104.046 kb on + strand, within Ac3H11_3199 at 104.046 kb on + strand, within Ac3H11_3199 at 104.070 kb on + strand, within Ac3H11_3199 at 104.271 kb on + strand, within Ac3H11_3199 at 104.271 kb on + strand, within Ac3H11_3199 at 104.272 kb on - strand, within Ac3H11_3199
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 101,617 + -0.4 101,617 + -0.8 101,648 - -0.2 101,648 - -0.9 101,668 + -1.8 101,668 + +1.2 101,668 + -1.6 101,669 - -0.2 101,834 - +1.3 102,551 - -0.1 102,551 - -0.3 102,551 - -0.7 102,679 - -4.0 102,679 - +1.8 102,679 - +0.9 102,679 - -0.0 103,071 + Ac3H11_3198 0.50 -0.0 103,095 + Ac3H11_3198 0.53 -1.2 103,099 + Ac3H11_3198 0.53 -0.7 103,100 - Ac3H11_3198 0.53 +1.6 103,100 - Ac3H11_3198 0.53 -0.0 103,100 - Ac3H11_3198 0.53 +0.3 103,100 - Ac3H11_3198 0.53 +0.1 103,110 + Ac3H11_3198 0.54 +0.2 103,161 + Ac3H11_3198 0.60 +1.6 103,161 + Ac3H11_3198 0.60 +1.3 103,296 + Ac3H11_3198 0.74 +1.5 103,296 + Ac3H11_3198 0.74 -2.3 103,297 - Ac3H11_3198 0.74 +3.2 103,297 - Ac3H11_3198 0.74 +0.1 103,572 + +0.9 103,572 + -0.7 103,656 + +0.2 103,657 - -2.8 103,657 - +1.7 103,657 - -1.3 103,657 - +0.6 103,866 + Ac3H11_3199 0.32 +0.8 103,887 + Ac3H11_3199 0.34 +2.3 103,887 + Ac3H11_3199 0.34 +0.9 103,888 - Ac3H11_3199 0.34 -0.1 103,890 + Ac3H11_3199 0.34 +0.2 103,890 + Ac3H11_3199 0.34 +0.6 103,890 + Ac3H11_3199 0.34 -0.1 103,891 - Ac3H11_3199 0.34 +0.7 103,891 - Ac3H11_3199 0.34 -1.0 104,046 + Ac3H11_3199 0.51 -1.5 104,046 + Ac3H11_3199 0.51 +0.3 104,046 + Ac3H11_3199 0.51 -3.0 104,046 + Ac3H11_3199 0.51 +0.0 104,046 + Ac3H11_3199 0.51 -0.9 104,070 + Ac3H11_3199 0.53 -1.4 104,271 + Ac3H11_3199 0.75 +1.0 104,271 + Ac3H11_3199 0.75 +0.5 104,272 - Ac3H11_3199 0.75 -4.1
Or see this region's nucleotide sequence