Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3155 and Ac3H11_3156 are separated by 134 nucleotides Ac3H11_3156 and Ac3H11_3157 are separated by 65 nucleotides Ac3H11_3157 and Ac3H11_3158 are separated by 29 nucleotides
Ac3H11_3155 - Putative alkanesulfonate metabolism utilization regulator, at 57,255 to 58,043
_3155
Ac3H11_3156 - Succinate dehydrogenase cytochrome b-556 subunit, at 58,178 to 58,612
_3156
Ac3H11_3157 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 58,678 to 59,043
_3157
Ac3H11_3158 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 59,073 to 60,878
_3158
Position (kb) 58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 57.340 kb on - strand, within Ac3H11_3155 at 57.340 kb on - strand, within Ac3H11_3155 at 57.555 kb on + strand, within Ac3H11_3155 at 57.556 kb on - strand, within Ac3H11_3155 at 57.804 kb on + strand, within Ac3H11_3155 at 57.804 kb on + strand, within Ac3H11_3155 at 57.804 kb on + strand, within Ac3H11_3155 at 57.804 kb on + strand at 57.804 kb on + strand, within Ac3H11_3155 at 57.804 kb on + strand, within Ac3H11_3155 at 57.805 kb on - strand, within Ac3H11_3155 at 57.805 kb on - strand, within Ac3H11_3155 at 57.805 kb on - strand, within Ac3H11_3155 at 57.805 kb on - strand, within Ac3H11_3155 at 57.805 kb on - strand, within Ac3H11_3155 at 57.805 kb on - strand, within Ac3H11_3155 at 57.805 kb on - strand, within Ac3H11_3155 at 57.819 kb on + strand, within Ac3H11_3155 at 57.820 kb on - strand, within Ac3H11_3155 at 57.820 kb on - strand, within Ac3H11_3155 at 57.820 kb on - strand, within Ac3H11_3155 at 57.960 kb on + strand, within Ac3H11_3155 at 57.960 kb on + strand, within Ac3H11_3155 at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.967 kb on - strand at 57.989 kb on - strand at 58.023 kb on + strand at 58.023 kb on + strand at 58.024 kb on - strand at 58.156 kb on + strand at 58.607 kb on + strand at 58.607 kb on + strand at 58.623 kb on + strand at 58.623 kb on + strand at 58.623 kb on + strand at 58.623 kb on + strand at 58.623 kb on + strand at 58.623 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 57,340 - Ac3H11_3155 0.11 +3.2 57,340 - Ac3H11_3155 0.11 -1.6 57,555 + Ac3H11_3155 0.38 -2.2 57,556 - Ac3H11_3155 0.38 +0.8 57,804 + Ac3H11_3155 0.70 -1.1 57,804 + Ac3H11_3155 0.70 -1.3 57,804 + Ac3H11_3155 0.70 -1.6 57,804 + +0.1 57,804 + Ac3H11_3155 0.70 -1.2 57,804 + Ac3H11_3155 0.70 -0.5 57,805 - Ac3H11_3155 0.70 -1.3 57,805 - Ac3H11_3155 0.70 -3.9 57,805 - Ac3H11_3155 0.70 -3.9 57,805 - Ac3H11_3155 0.70 -1.9 57,805 - Ac3H11_3155 0.70 -2.7 57,805 - Ac3H11_3155 0.70 -2.5 57,805 - Ac3H11_3155 0.70 -0.3 57,819 + Ac3H11_3155 0.71 -1.3 57,820 - Ac3H11_3155 0.72 +0.5 57,820 - Ac3H11_3155 0.72 -2.1 57,820 - Ac3H11_3155 0.72 -0.7 57,960 + Ac3H11_3155 0.89 +0.9 57,960 + Ac3H11_3155 0.89 +2.1 57,966 + -1.4 57,966 + -1.3 57,966 + +0.7 57,966 + -0.9 57,966 + -2.5 57,967 - +1.5 57,989 - -1.3 58,023 + -0.1 58,023 + +0.1 58,024 - -1.9 58,156 + +0.2 58,607 + +0.8 58,607 + -0.1 58,623 + +0.6 58,623 + -2.0 58,623 + -0.0 58,623 + +0.8 58,623 + -1.1 58,623 + +2.0
Or see this region's nucleotide sequence