Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2817

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2816 and Ac3H11_2817 are separated by 95 nucleotidesAc3H11_2817 and Ac3H11_2818 are separated by 64 nucleotidesAc3H11_2818 and Ac3H11_2819 are separated by 9 nucleotides Ac3H11_2816 - IncF plasmid conjugative transfer protein TraN, at 1,118,568 to 1,120,985 _2816 Ac3H11_2817 - hypothetical protein, at 1,121,081 to 1,121,377 _2817 Ac3H11_2818 - IncF plasmid conjugative transfer pilus assembly protein TraF, at 1,121,442 to 1,122,263 _2818 Ac3H11_2819 - IncF plasmid conjugative transfer pilus assembly protein TraH, at 1,122,273 to 1,123,721 _2819 Position (kb) 1121 1122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1120.139 kb on + strand, within Ac3H11_2816at 1120.140 kb on - strand, within Ac3H11_2816at 1120.146 kb on + strand, within Ac3H11_2816at 1120.146 kb on + strand, within Ac3H11_2816at 1120.147 kb on - strand, within Ac3H11_2816at 1120.212 kb on + strand, within Ac3H11_2816at 1120.238 kb on - strand, within Ac3H11_2816at 1120.445 kb on + strand, within Ac3H11_2816at 1120.446 kb on - strand, within Ac3H11_2816at 1120.446 kb on - strand, within Ac3H11_2816at 1120.452 kb on + strand, within Ac3H11_2816at 1120.453 kb on - strand, within Ac3H11_2816at 1120.453 kb on - strand, within Ac3H11_2816at 1120.453 kb on - strand, within Ac3H11_2816at 1120.509 kb on + strand, within Ac3H11_2816at 1120.572 kb on + strand, within Ac3H11_2816at 1120.572 kb on + strand, within Ac3H11_2816at 1120.572 kb on + strand, within Ac3H11_2816at 1120.572 kb on + strand, within Ac3H11_2816at 1120.573 kb on - strand, within Ac3H11_2816at 1120.573 kb on - strand, within Ac3H11_2816at 1120.573 kb on - strand, within Ac3H11_2816at 1120.662 kb on + strand, within Ac3H11_2816at 1120.662 kb on + strand, within Ac3H11_2816at 1120.663 kb on - strand, within Ac3H11_2816at 1120.663 kb on - strand, within Ac3H11_2816at 1120.663 kb on - strand, within Ac3H11_2816at 1120.663 kb on - strand, within Ac3H11_2816at 1120.884 kb on + strandat 1120.959 kb on + strandat 1120.962 kb on + strandat 1120.991 kb on - strandat 1121.023 kb on + strandat 1121.023 kb on + strandat 1121.145 kb on + strand, within Ac3H11_2817at 1121.146 kb on - strand, within Ac3H11_2817at 1121.204 kb on + strand, within Ac3H11_2817at 1121.204 kb on + strand, within Ac3H11_2817at 1121.205 kb on - strand, within Ac3H11_2817at 1121.205 kb on - strand, within Ac3H11_2817at 1121.205 kb on - strand, within Ac3H11_2817at 1121.205 kb on - strand, within Ac3H11_2817at 1121.205 kb on - strand, within Ac3H11_2817at 1121.284 kb on - strand, within Ac3H11_2817at 1121.404 kb on - strandat 1121.409 kb on + strandat 1121.541 kb on + strand, within Ac3H11_2818at 1121.724 kb on + strand, within Ac3H11_2818at 1121.724 kb on + strand, within Ac3H11_2818at 1121.725 kb on - strand, within Ac3H11_2818at 1121.763 kb on + strand, within Ac3H11_2818at 1121.934 kb on + strand, within Ac3H11_2818at 1121.934 kb on + strand, within Ac3H11_2818at 1121.935 kb on - strand, within Ac3H11_2818at 1121.953 kb on - strand, within Ac3H11_2818at 1122.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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1,120,139 + Ac3H11_2816 0.65 +0.9
1,120,140 - Ac3H11_2816 0.65 +2.8
1,120,146 + Ac3H11_2816 0.65 +1.1
1,120,146 + Ac3H11_2816 0.65 -1.3
1,120,147 - Ac3H11_2816 0.65 -0.4
1,120,212 + Ac3H11_2816 0.68 +0.8
1,120,238 - Ac3H11_2816 0.69 -0.6
1,120,445 + Ac3H11_2816 0.78 +0.0
1,120,446 - Ac3H11_2816 0.78 +0.4
1,120,446 - Ac3H11_2816 0.78 +1.5
1,120,452 + Ac3H11_2816 0.78 -2.5
1,120,453 - Ac3H11_2816 0.78 -1.2
1,120,453 - Ac3H11_2816 0.78 -0.4
1,120,453 - Ac3H11_2816 0.78 +0.3
1,120,509 + Ac3H11_2816 0.80 +0.7
1,120,572 + Ac3H11_2816 0.83 -1.8
1,120,572 + Ac3H11_2816 0.83 -1.4
1,120,572 + Ac3H11_2816 0.83 -0.1
1,120,572 + Ac3H11_2816 0.83 -0.7
1,120,573 - Ac3H11_2816 0.83 -1.0
1,120,573 - Ac3H11_2816 0.83 +1.0
1,120,573 - Ac3H11_2816 0.83 -0.1
1,120,662 + Ac3H11_2816 0.87 +1.0
1,120,662 + Ac3H11_2816 0.87 +1.2
1,120,663 - Ac3H11_2816 0.87 -3.3
1,120,663 - Ac3H11_2816 0.87 -2.9
1,120,663 - Ac3H11_2816 0.87 +0.1
1,120,663 - Ac3H11_2816 0.87 -0.0
1,120,884 + -0.0
1,120,959 + -0.4
1,120,962 + +1.2
1,120,991 - -1.1
1,121,023 + +0.7
1,121,023 + -0.5
1,121,145 + Ac3H11_2817 0.22 -1.1
1,121,146 - Ac3H11_2817 0.22 -0.8
1,121,204 + Ac3H11_2817 0.41 -1.8
1,121,204 + Ac3H11_2817 0.41 -0.3
1,121,205 - Ac3H11_2817 0.42 +1.5
1,121,205 - Ac3H11_2817 0.42 -2.3
1,121,205 - Ac3H11_2817 0.42 +1.9
1,121,205 - Ac3H11_2817 0.42 +2.8
1,121,205 - Ac3H11_2817 0.42 +0.6
1,121,284 - Ac3H11_2817 0.68 -0.3
1,121,404 - +0.7
1,121,409 + +1.2
1,121,541 + Ac3H11_2818 0.12 -0.9
1,121,724 + Ac3H11_2818 0.34 +0.4
1,121,724 + Ac3H11_2818 0.34 -3.0
1,121,725 - Ac3H11_2818 0.34 -0.8
1,121,763 + Ac3H11_2818 0.39 -0.5
1,121,934 + Ac3H11_2818 0.60 -3.0
1,121,934 + Ac3H11_2818 0.60 +1.1
1,121,935 - Ac3H11_2818 0.60 +1.0
1,121,953 - Ac3H11_2818 0.62 +2.1
1,122,261 + -0.8

Or see this region's nucleotide sequence