Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_266 and Ac3H11_267 are separated by 6 nucleotides Ac3H11_267 and Ac3H11_268 overlap by 4 nucleotides Ac3H11_268 and Ac3H11_269 are separated by 229 nucleotides
Ac3H11_266 - DNA internalization-related competence protein ComEC/Rec2, at 88,678 to 91,248
_266
Ac3H11_267 - hypothetical protein, at 91,255 to 91,404
_267
Ac3H11_268 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 91,401 to 91,859
_268
Ac3H11_269 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 92,089 to 93,855
_269
Position (kb) 91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 90.539 kb on + strand, within Ac3H11_266 at 90.539 kb on + strand, within Ac3H11_266 at 90.539 kb on + strand, within Ac3H11_266 at 90.539 kb on + strand, within Ac3H11_266 at 90.539 kb on + strand, within Ac3H11_266 at 90.539 kb on + strand, within Ac3H11_266 at 90.540 kb on - strand, within Ac3H11_266 at 90.540 kb on - strand, within Ac3H11_266 at 90.722 kb on + strand, within Ac3H11_266 at 90.723 kb on - strand, within Ac3H11_266 at 90.896 kb on + strand, within Ac3H11_266 at 90.896 kb on + strand, within Ac3H11_266 at 90.897 kb on - strand, within Ac3H11_266 at 90.897 kb on - strand, within Ac3H11_266 at 90.930 kb on + strand, within Ac3H11_266 at 90.931 kb on - strand, within Ac3H11_266 at 91.073 kb on + strand at 91.073 kb on + strand at 91.228 kb on - strand at 91.238 kb on - strand at 91.238 kb on - strand at 91.259 kb on + strand at 91.259 kb on + strand at 91.259 kb on + strand at 91.259 kb on + strand at 91.259 kb on + strand at 91.259 kb on + strand at 91.260 kb on - strand at 91.308 kb on + strand, within Ac3H11_267 at 91.308 kb on + strand, within Ac3H11_267 at 91.309 kb on - strand, within Ac3H11_267 at 91.309 kb on - strand, within Ac3H11_267 at 91.309 kb on - strand, within Ac3H11_267 at 91.309 kb on - strand, within Ac3H11_267 at 91.309 kb on - strand, within Ac3H11_267 at 91.411 kb on - strand at 91.411 kb on - strand at 91.471 kb on - strand, within Ac3H11_268 at 91.479 kb on + strand, within Ac3H11_268 at 91.480 kb on - strand, within Ac3H11_268 at 91.480 kb on - strand, within Ac3H11_268 at 91.480 kb on - strand, within Ac3H11_268 at 91.480 kb on - strand, within Ac3H11_268 at 91.480 kb on - strand, within Ac3H11_268 at 91.480 kb on - strand, within Ac3H11_268 at 92.090 kb on + strand at 92.090 kb on + strand at 92.090 kb on + strand at 92.306 kb on + strand, within Ac3H11_269 at 92.306 kb on + strand, within Ac3H11_269 at 92.306 kb on + strand, within Ac3H11_269 at 92.306 kb on + strand, within Ac3H11_269 at 92.306 kb on + strand, within Ac3H11_269 at 92.307 kb on - strand, within Ac3H11_269 at 92.307 kb on - strand, within Ac3H11_269
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 90,539 + Ac3H11_266 0.72 -1.3 90,539 + Ac3H11_266 0.72 -0.5 90,539 + Ac3H11_266 0.72 -1.6 90,539 + Ac3H11_266 0.72 +0.7 90,539 + Ac3H11_266 0.72 +0.9 90,539 + Ac3H11_266 0.72 -0.8 90,540 - Ac3H11_266 0.72 +1.3 90,540 - Ac3H11_266 0.72 -2.9 90,722 + Ac3H11_266 0.80 +0.4 90,723 - Ac3H11_266 0.80 +1.3 90,896 + Ac3H11_266 0.86 +0.2 90,896 + Ac3H11_266 0.86 -3.0 90,897 - Ac3H11_266 0.86 -2.3 90,897 - Ac3H11_266 0.86 +0.4 90,930 + Ac3H11_266 0.88 +1.4 90,931 - Ac3H11_266 0.88 +1.4 91,073 + -0.2 91,073 + -1.7 91,228 - +0.2 91,238 - -2.4 91,238 - +0.1 91,259 + +0.7 91,259 + +0.4 91,259 + +1.5 91,259 + -0.0 91,259 + -3.2 91,259 + +1.0 91,260 - +0.6 91,308 + Ac3H11_267 0.35 -3.5 91,308 + Ac3H11_267 0.35 -0.1 91,309 - Ac3H11_267 0.36 +0.7 91,309 - Ac3H11_267 0.36 -2.1 91,309 - Ac3H11_267 0.36 -2.5 91,309 - Ac3H11_267 0.36 -0.4 91,309 - Ac3H11_267 0.36 +0.5 91,411 - -0.7 91,411 - +1.9 91,471 - Ac3H11_268 0.15 -2.2 91,479 + Ac3H11_268 0.17 +2.1 91,480 - Ac3H11_268 0.17 -0.8 91,480 - Ac3H11_268 0.17 -1.6 91,480 - Ac3H11_268 0.17 -1.3 91,480 - Ac3H11_268 0.17 -1.4 91,480 - Ac3H11_268 0.17 -0.1 91,480 - Ac3H11_268 0.17 -2.4 92,090 + +2.0 92,090 + -1.1 92,090 + -2.0 92,306 + Ac3H11_269 0.12 -0.6 92,306 + Ac3H11_269 0.12 +0.7 92,306 + Ac3H11_269 0.12 -0.5 92,306 + Ac3H11_269 0.12 -0.1 92,306 + Ac3H11_269 0.12 +0.6 92,307 - Ac3H11_269 0.12 +1.4 92,307 - Ac3H11_269 0.12 -1.8
Or see this region's nucleotide sequence