Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_229 and Ac3H11_230 overlap by 4 nucleotides Ac3H11_230 and Ac3H11_231 are separated by 26 nucleotides Ac3H11_231 and Ac3H11_232 are separated by 258 nucleotides
Ac3H11_229 - Hemin transport protein HmuS, at 42,659 to 43,786
_229
Ac3H11_230 - hypothetical protein, at 43,783 to 44,139
_230
Ac3H11_231 - TonB-dependent hemin , ferrichrome receptor, at 44,166 to 46,454
_231
Ac3H11_232 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 46,713 to 48,290
_232
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.230 kb on + strand, within Ac3H11_229 at 43.231 kb on - strand, within Ac3H11_229 at 43.231 kb on - strand, within Ac3H11_229 at 44.021 kb on + strand, within Ac3H11_230 at 44.078 kb on + strand, within Ac3H11_230 at 44.216 kb on - strand at 44.293 kb on + strand at 44.359 kb on + strand at 44.359 kb on + strand at 44.360 kb on - strand at 44.467 kb on + strand, within Ac3H11_231 at 44.551 kb on + strand, within Ac3H11_231 at 44.905 kb on + strand, within Ac3H11_231 at 44.906 kb on - strand, within Ac3H11_231 at 44.942 kb on - strand, within Ac3H11_231 at 45.091 kb on + strand, within Ac3H11_231 at 45.091 kb on + strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.092 kb on - strand, within Ac3H11_231 at 45.200 kb on - strand, within Ac3H11_231 at 45.200 kb on - strand, within Ac3H11_231 at 45.211 kb on + strand, within Ac3H11_231 at 45.211 kb on + strand, within Ac3H11_231 at 45.292 kb on + strand, within Ac3H11_231 at 45.293 kb on - strand, within Ac3H11_231 at 45.293 kb on - strand, within Ac3H11_231 at 45.343 kb on + strand, within Ac3H11_231 at 45.343 kb on + strand, within Ac3H11_231 at 45.344 kb on - strand, within Ac3H11_231 at 45.344 kb on - strand, within Ac3H11_231 at 45.523 kb on + strand, within Ac3H11_231 at 45.666 kb on - strand, within Ac3H11_231 at 45.889 kb on + strand, within Ac3H11_231 at 45.889 kb on + strand, within Ac3H11_231 at 45.890 kb on - strand, within Ac3H11_231 at 45.949 kb on + strand, within Ac3H11_231 at 45.949 kb on + strand, within Ac3H11_231 at 45.982 kb on + strand, within Ac3H11_231 at 45.982 kb on + strand, within Ac3H11_231 at 45.982 kb on + strand, within Ac3H11_231 at 45.983 kb on - strand, within Ac3H11_231 at 45.983 kb on - strand, within Ac3H11_231 at 45.983 kb on - strand, within Ac3H11_231 at 46.487 kb on + strand at 46.487 kb on + strand at 46.488 kb on - strand at 46.488 kb on - strand at 46.597 kb on + strand at 46.597 kb on + strand at 46.597 kb on + strand at 46.667 kb on - strand at 46.677 kb on + strand at 46.677 kb on + strand at 47.005 kb on + strand, within Ac3H11_232 at 47.260 kb on + strand, within Ac3H11_232
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 43,230 + Ac3H11_229 0.51 -0.2 43,231 - Ac3H11_229 0.51 +1.3 43,231 - Ac3H11_229 0.51 -0.6 44,021 + Ac3H11_230 0.67 +0.6 44,078 + Ac3H11_230 0.83 -2.1 44,216 - -0.4 44,293 + -1.4 44,359 + -2.0 44,359 + +0.2 44,360 - -2.6 44,467 + Ac3H11_231 0.13 -0.1 44,551 + Ac3H11_231 0.17 -0.9 44,905 + Ac3H11_231 0.32 +0.7 44,906 - Ac3H11_231 0.32 -0.5 44,942 - Ac3H11_231 0.34 -0.7 45,091 + Ac3H11_231 0.40 +0.7 45,091 + Ac3H11_231 0.40 +0.6 45,092 - Ac3H11_231 0.40 +1.4 45,092 - Ac3H11_231 0.40 -3.2 45,092 - Ac3H11_231 0.40 -0.6 45,092 - Ac3H11_231 0.40 +1.0 45,092 - Ac3H11_231 0.40 +0.5 45,200 - Ac3H11_231 0.45 -0.3 45,200 - Ac3H11_231 0.45 +0.4 45,211 + Ac3H11_231 0.46 -3.5 45,211 + Ac3H11_231 0.46 -1.5 45,292 + Ac3H11_231 0.49 -0.5 45,293 - Ac3H11_231 0.49 -1.7 45,293 - Ac3H11_231 0.49 -0.5 45,343 + Ac3H11_231 0.51 +0.0 45,343 + Ac3H11_231 0.51 +0.0 45,344 - Ac3H11_231 0.51 -1.4 45,344 - Ac3H11_231 0.51 +2.6 45,523 + Ac3H11_231 0.59 -1.7 45,666 - Ac3H11_231 0.66 +0.7 45,889 + Ac3H11_231 0.75 -2.5 45,889 + Ac3H11_231 0.75 -0.8 45,890 - Ac3H11_231 0.75 +0.5 45,949 + Ac3H11_231 0.78 -0.9 45,949 + Ac3H11_231 0.78 -2.0 45,982 + Ac3H11_231 0.79 +0.2 45,982 + Ac3H11_231 0.79 -1.1 45,982 + Ac3H11_231 0.79 -1.4 45,983 - Ac3H11_231 0.79 -1.3 45,983 - Ac3H11_231 0.79 -1.0 45,983 - Ac3H11_231 0.79 +1.2 46,487 + +0.6 46,487 + +0.1 46,488 - -2.4 46,488 - +0.4 46,597 + +0.5 46,597 + -2.1 46,597 + +0.1 46,667 - +0.9 46,677 + +0.4 46,677 + -1.0 47,005 + Ac3H11_232 0.19 -0.2 47,260 + Ac3H11_232 0.35 -1.4
Or see this region's nucleotide sequence