Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28700

Experiment: Doxycycline hyclate 0.0006 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0006 mg/ml
6,247,952	+		AO353_28695	0.29	+0.6
6,247,952	+		AO353_28695	0.29	-1.2
6,247,952	+		AO353_28695	0.29	-1.0
6,247,953	-		AO353_28695	0.29	-0.4
6,247,953	-		AO353_28695	0.29	+1.6
6,248,083	+		AO353_28695	0.40	-0.0
6,248,083	+		AO353_28695	0.40	+1.9
6,248,083	+		AO353_28695	0.40	+1.4
6,248,083	+		AO353_28695	0.40	+0.8
6,248,083	+		AO353_28695	0.40	+2.4
6,248,084	-		AO353_28695	0.40	+0.8
6,248,084	-		AO353_28695	0.40	+0.6
6,248,154	-		AO353_28695	0.46	+0.6
6,248,188	-		AO353_28695	0.48	-1.0
6,248,194	-		AO353_28695	0.49	+3.9
6,248,271	-		AO353_28695	0.55	-1.9
6,248,334	+		AO353_28695	0.60	-0.8
6,248,334	+		AO353_28695	0.60	-0.0
6,248,335	-		AO353_28695	0.61	-1.0
6,248,355	+		AO353_28695	0.62	-0.4
6,248,355	+		AO353_28695	0.62	-0.0
6,248,355	+		AO353_28695	0.62	+0.6
6,248,356	-		AO353_28695	0.62	-1.7
6,248,356	-		AO353_28695	0.62	+2.3
6,248,356	-		AO353_28695	0.62	+0.6
6,248,356	-		AO353_28695	0.62	-1.0
6,248,356	-		AO353_28695	0.62	+2.0
6,248,356	-		AO353_28695	0.62	-0.8
6,248,356	-		AO353_28695	0.62	-0.4
6,248,421	+		AO353_28695	0.68	+1.6
6,248,436	+		AO353_28695	0.69	+0.6
6,248,448	+		AO353_28695	0.70	-1.6
6,248,572	-		AO353_28695	0.80	-0.0
6,248,635	+		AO353_28695	0.85	+1.4
6,248,635	+		AO353_28695	0.85	+0.6
6,248,635	+		AO353_28695	0.85	+1.2
6,248,635	+		AO353_28695	0.85	+2.9
6,248,635	+		AO353_28695	0.85	+2.1
6,248,635	+		AO353_28695	0.85	+0.4
6,248,635	+		AO353_28695	0.85	+1.6
6,248,635	+		AO353_28695	0.85	+0.6
6,248,636	-		AO353_28695	0.85	-0.8
6,248,636	-		AO353_28695	0.85	-0.6
6,248,636	-		AO353_28695	0.85	-1.0
6,248,636	-		AO353_28695	0.85	-2.5
6,248,636	-		AO353_28695	0.85	-1.0
6,248,663	+		AO353_28695	0.88	-1.2
6,248,671	+		AO353_28695	0.88	-1.8
6,248,671	+		AO353_28695	0.88	+1.4
6,248,671	+		AO353_28695	0.88	+0.3
6,248,671	+		AO353_28695	0.88	+3.4
6,248,672	-		AO353_28695	0.88	-0.0
6,248,672	-		AO353_28695	0.88	+1.1
6,248,672	-		AO353_28695	0.88	-1.0
6,248,672	-		AO353_28695	0.88	-0.1
6,248,705	+				-1.2
6,248,706	-				-1.0
6,248,706	-				+0.3
6,248,706	-				+0.6
6,248,775	+				-0.8
6,248,793	+				+1.0
6,248,793	+				-0.0
6,248,794	-				-1.0
6,248,794	-				-0.0
6,248,809	+				-0.9
6,248,822	+				+2.8
6,248,822	+				-1.9
6,248,822	+				+1.4
6,248,822	+				-1.8
6,248,822	+				+1.1
6,248,822	+				-0.8
6,248,822	+				+2.6
6,248,822	+				-0.8
6,248,822	+				+2.2
6,248,822	+				-1.4
6,248,822	+				-2.0
6,248,823	-				+2.4
6,248,823	-				-0.8
6,248,823	-				-0.4
6,248,823	-				+1.8
6,248,823	-				-1.0
6,248,823	-				+2.0
6,248,823	-				-1.6
6,248,823	-				-0.0
6,248,891	-				+0.6
6,248,891	-				-0.0
6,248,991	+		AO353_28700	0.14	+1.6
6,248,991	+				+0.6
6,248,992	-		AO353_28700	0.14	+1.6
6,248,992	-		AO353_28700	0.14	+2.6
6,249,041	+		AO353_28700	0.26	-0.3
6,249,041	+		AO353_28700	0.26	+1.9
6,249,042	-		AO353_28700	0.27	-0.0
6,249,281	+		AO353_28700	0.88	+4.5
6,249,317	+				-2.7
6,249,317	+				-1.6
6,249,317	+				+2.9
6,249,317	+				-0.8
6,249,380	+				+1.6
6,249,380	+				+1.4
6,249,380	+				+0.3
6,249,380	+				-0.8
6,249,380	+				+0.8
6,249,380	+				-0.6
6,249,380	+				-0.8
6,249,381	-				-1.6
6,249,415	+				+1.4
6,249,483	+				+0.6
6,249,483	+				-0.9
6,249,518	-				-0.4
6,249,554	+		AO353_28705	0.12	-2.3
6,249,554	+		AO353_28705	0.12	-1.2
6,249,555	-		AO353_28705	0.12	+1.1
6,249,555	-		AO353_28705	0.12	+1.2
6,249,580	+		AO353_28705	0.16	-1.4
6,249,580	+		AO353_28705	0.16	-0.4
6,249,580	+		AO353_28705	0.16	+1.6
6,249,580	+		AO353_28705	0.16	-1.6
6,249,580	+		AO353_28705	0.16	+1.4
6,249,581	-		AO353_28705	0.16	-0.8
6,249,581	-		AO353_28705	0.16	+0.5
6,249,627	+		AO353_28705	0.24	-0.0
6,249,627	+		AO353_28705	0.24	-1.0
6,249,628	-		AO353_28705	0.24	-1.4
6,249,628	-		AO353_28705	0.24	+2.4
6,249,652	+		AO353_28705	0.28	-0.4
6,249,672	+		AO353_28705	0.31	-1.8
6,249,672	+		AO353_28705	0.31	-1.8
6,249,672	+		AO353_28705	0.31	-1.0
6,249,672	+		AO353_28705	0.31	+1.3
6,249,672	+		AO353_28705	0.31	-1.0
6,249,672	+		AO353_28705	0.31	+3.2
6,249,672	+				+1.6
6,249,672	+		AO353_28705	0.31	-1.2
6,249,672	+		AO353_28705	0.31	-1.2
6,249,672	+		AO353_28705	0.31	-1.0
6,249,672	+		AO353_28705	0.31	-0.1
6,249,673	-		AO353_28705	0.31	-1.6
6,249,673	-		AO353_28705	0.31	+0.1
6,249,673	-		AO353_28705	0.31	+2.2
6,249,673	-		AO353_28705	0.31	-2.9
6,249,673	-		AO353_28705	0.31	-0.8
6,249,674	+		AO353_28705	0.31	+1.6
6,249,674	+		AO353_28705	0.31	-0.0
6,249,674	+		AO353_28705	0.31	-2.6
6,249,674	+		AO353_28705	0.31	-1.8
6,249,674	+		AO353_28705	0.31	-1.0
6,249,674	+		AO353_28705	0.31	-0.8
6,249,674	+		AO353_28705	0.31	-1.6
6,249,675	-		AO353_28705	0.31	+1.6
6,249,675	-		AO353_28705	0.31	+1.1
6,249,675	-		AO353_28705	0.31	-1.6
6,249,675	-		AO353_28705	0.31	-0.0
6,249,675	-		AO353_28705	0.31	+0.7
6,249,675	-		AO353_28705	0.31	+0.7
6,249,675	-		AO353_28705	0.31	-1.2
6,249,675	-		AO353_28705	0.31	+2.7
6,249,675	-		AO353_28705	0.31	-1.3
6,249,675	-		AO353_28705	0.31	+0.2
6,249,675	-		AO353_28705	0.31	-0.0
6,249,675	-		AO353_28705	0.31	-1.0
6,249,675	-		AO353_28705	0.31	-2.6
6,249,675	-		AO353_28705	0.31	+0.6
6,249,675	-		AO353_28705	0.31	+1.2
6,249,675	-		AO353_28705	0.31	-0.4
6,249,675	-		AO353_28705	0.31	-1.0
6,249,675	-		AO353_28705	0.31	-0.9
6,249,710	-		AO353_28705	0.37	-1.4
6,249,728	-		AO353_28705	0.40	-1.0
6,249,754	+		AO353_28705	0.44	-1.4
6,249,754	+		AO353_28705	0.44	+4.9
6,249,755	-		AO353_28705	0.44	-0.8
6,249,755	-		AO353_28705	0.44	-0.5
6,249,755	-		AO353_28705	0.44	-1.6
6,249,758	+		AO353_28705	0.45	+0.6
6,249,759	-		AO353_28705	0.45	-2.1
6,249,759	-		AO353_28705	0.45	-0.8
6,249,759	-		AO353_28705	0.45	-1.0
6,249,801	+		AO353_28705	0.52	-1.0
6,249,801	+		AO353_28705	0.52	-0.7
6,249,801	+		AO353_28705	0.52	-0.4
6,249,802	-		AO353_28705	0.52	+2.0
6,249,802	-		AO353_28705	0.52	+1.1
6,249,802	-		AO353_28705	0.52	-0.4
6,249,802	-		AO353_28705	0.52	+0.2
6,249,802	-		AO353_28705	0.52	+1.3
6,249,802	-		AO353_28705	0.52	-0.0
6,249,802	-		AO353_28705	0.52	-0.4
6,249,802	-		AO353_28705	0.52	-0.8
6,249,802	-		AO353_28705	0.52	+1.0
6,249,802	-		AO353_28705	0.52	+0.6
6,249,802	-		AO353_28705	0.52	-1.6
6,249,802	-		AO353_28705	0.52	-0.4
6,249,802	-		AO353_28705	0.52	+1.6
6,249,802	-		AO353_28705	0.52	+2.2
6,249,802	-		AO353_28705	0.52	+1.4
6,249,802	-		AO353_28705	0.52	+0.1
6,249,802	-		AO353_28705	0.52	+1.0
6,249,808	-		AO353_28705	0.53	+1.6
6,249,823	+		AO353_28705	0.55	+1.9
6,249,823	+		AO353_28705	0.55	-1.0
6,249,824	-		AO353_28705	0.56	+4.5
6,249,824	-		AO353_28705	0.56	+0.7
6,249,824	-		AO353_28705	0.56	+0.9
6,249,824	-		AO353_28705	0.56	-1.7
6,249,854	+		AO353_28705	0.60	-1.4
6,249,869	+		AO353_28705	0.63	+0.6
6,249,921	+		AO353_28705	0.71	-0.8
6,249,921	+		AO353_28705	0.71	-2.1
6,249,921	+		AO353_28705	0.71	-0.0
6,249,921	+		AO353_28705	0.71	+1.6
6,249,921	+		AO353_28705	0.71	-2.2
6,249,921	+		AO353_28705	0.71	+0.2
6,249,921	+		AO353_28705	0.71	+0.6
6,249,921	+		AO353_28705	0.71	+0.5
6,249,921	+		AO353_28705	0.71	+1.9
6,249,921	+		AO353_28705	0.71	+2.6
6,249,922	-		AO353_28705	0.72	+2.4
6,249,922	-		AO353_28705	0.72	-1.2
6,249,922	-		AO353_28705	0.72	-1.9
6,249,922	-		AO353_28705	0.72	-0.8
6,249,922	-		AO353_28705	0.72	-0.4
6,249,968	+		AO353_28705	0.79	-1.4
6,249,977	+		AO353_28705	0.80	-1.2
6,250,098	+				-0.8
6,250,098	+				+0.7
6,250,098	+				-2.3
6,250,098	+				-1.6
6,250,098	+				-2.8
6,250,098	+				-0.4
6,250,098	+				-0.0
6,250,098	+				-1.2
6,250,098	+				-1.6
6,250,098	+				-0.6
6,250,098	+				+4.7
6,250,098	+				+0.7
6,250,098	+				-1.2
6,250,098	+				-0.8
6,250,098	+				-0.0
6,250,098	+				+0.5
6,250,098	+				+0.6
6,250,098	+				-1.6
6,250,098	+				-0.8
6,250,098	+				+1.0
6,250,098	+				+0.3
6,250,098	+				+0.2
6,250,098	+				+2.3
6,250,098	+				+0.8
6,250,098	+				-2.0
6,250,098	+				-2.6
6,250,098	+				-1.6
6,250,098	+				-2.2
6,250,099	-				-0.8
6,250,099	-				-2.0
6,250,099	-				-1.4
6,250,099	-				+2.2
6,250,099	-				-1.2
6,250,099	-				-2.3
6,250,099	-				-2.0
6,250,099	-				+3.8
6,250,099	-				+1.9
6,250,099	-				+0.6
6,250,099	-				-1.2
6,250,099	-				-1.2
6,250,099	-				-0.5
6,250,099	-				-1.8
6,250,099	-				-1.2
6,250,099	-				-0.0
6,250,099	-				-3.3
6,250,099	-				-0.0
6,250,099	-				+0.6
6,250,099	-				+2.6
6,250,099	-				-0.5
6,250,099	-				-1.9
6,250,099	-				+1.0
6,250,099	-				-2.1
6,250,099	-				-2.6
6,250,099	-				+1.2
6,250,099	-				+3.0
6,250,099	-				-2.0
6,250,099	-				+2.0
6,250,099	-				+2.4
6,250,102	+				-1.6
6,250,102	+				+0.5
6,250,102	+				+2.0
6,250,102	+				-0.4
6,250,102	+				-1.8
6,250,102	+				-0.4
6,250,102	+				-0.0
6,250,102	+				+1.3
6,250,103	-				-0.8
6,250,128	-				-0.4
6,250,168	+				-1.4
6,250,169	-				+5.0
6,250,169	-				-1.2
6,250,175	+				-1.0
6,250,182	+				-2.0
6,250,182	+				-2.8
6,250,184	+				+1.9
6,250,184	+				-2.5
6,250,199	+				+1.8
6,250,200	-				-1.2
6,250,204	-				-0.4
6,250,223	+				-0.4
6,250,224	-				-1.6
6,250,276	+				+4.7
6,250,276	+				-1.9
6,250,276	+				-2.6
6,250,276	+				-0.8
6,250,277	-				-1.9
6,250,277	-				-1.0
6,250,277	-				+0.6
6,250,289	+				+0.6
6,250,289	+				-1.8
6,250,289	+				+4.4
6,250,290	-				-0.8