Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27005 and AO353_27010 overlap by 11 nucleotides AO353_27010 and AO353_27015 are separated by 89 nucleotides AO353_27015 and AO353_27020 overlap by 46 nucleotides AO353_27020 and AO353_27025 are separated by 185 nucleotides
AO353_27005: AO353_27005 - proline hydroxylase, at 5,918,537 to 5,919,253
_27005
AO353_27010: AO353_27010 - alpha-ketoglutarate-dependent dioxygenase, at 5,919,243 to 5,919,920
_27010
AO353_27015: AO353_27015 - 6-O-methylguanine DNA methyltransferase, at 5,920,010 to 5,921,113
_27015
AO353_27020: AO353_27020 - transcriptional regulator, at 5,921,068 to 5,921,526
_27020
AO353_27025: AO353_27025 - 2-nitropropane dioxygenase, at 5,921,712 to 5,922,776
_27025
Position (kb) 5920
5921
5922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5919.220 kb on + strand at 5919.251 kb on + strand at 5919.400 kb on + strand, within AO353_27010 at 5919.400 kb on + strand, within AO353_27010 at 5919.400 kb on + strand, within AO353_27010 at 5919.401 kb on - strand, within AO353_27010 at 5919.455 kb on - strand, within AO353_27010 at 5919.455 kb on - strand, within AO353_27010 at 5919.511 kb on - strand, within AO353_27010 at 5919.511 kb on - strand, within AO353_27010 at 5919.694 kb on - strand, within AO353_27010 at 5919.981 kb on + strand at 5919.987 kb on + strand at 5919.987 kb on + strand at 5919.987 kb on + strand at 5919.988 kb on - strand at 5919.988 kb on - strand at 5919.988 kb on - strand at 5919.988 kb on - strand at 5919.997 kb on - strand at 5919.997 kb on - strand at 5919.997 kb on - strand at 5920.097 kb on + strand at 5920.098 kb on - strand at 5920.098 kb on - strand at 5920.121 kb on + strand, within AO353_27015 at 5920.121 kb on + strand, within AO353_27015 at 5920.121 kb on + strand, within AO353_27015 at 5920.121 kb on + strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.406 kb on + strand, within AO353_27015 at 5920.407 kb on - strand, within AO353_27015 at 5920.407 kb on - strand, within AO353_27015 at 5920.478 kb on + strand, within AO353_27015 at 5920.478 kb on + strand, within AO353_27015 at 5920.479 kb on - strand, within AO353_27015 at 5920.479 kb on - strand, within AO353_27015 at 5920.479 kb on - strand, within AO353_27015 at 5920.511 kb on + strand, within AO353_27015 at 5920.511 kb on + strand, within AO353_27015 at 5920.511 kb on + strand, within AO353_27015 at 5920.512 kb on - strand, within AO353_27015 at 5920.512 kb on - strand, within AO353_27015 at 5920.858 kb on + strand, within AO353_27015 at 5921.062 kb on + strand at 5921.063 kb on - strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.112 kb on - strand at 5921.234 kb on + strand, within AO353_27020 at 5921.320 kb on + strand, within AO353_27020 at 5921.320 kb on + strand, within AO353_27020 at 5921.321 kb on - strand, within AO353_27020 at 5921.321 kb on - strand at 5921.321 kb on - strand, within AO353_27020 at 5921.333 kb on + strand, within AO353_27020 at 5921.333 kb on + strand, within AO353_27020 at 5921.334 kb on - strand, within AO353_27020 at 5921.342 kb on + strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.374 kb on - strand, within AO353_27020 at 5921.463 kb on + strand, within AO353_27020 at 5921.463 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.488 kb on + strand at 5921.489 kb on - strand at 5921.612 kb on + strand at 5921.612 kb on + strand at 5921.613 kb on - strand at 5921.613 kb on - strand at 5921.643 kb on - strand at 5921.676 kb on + strand at 5921.676 kb on + strand at 5921.677 kb on - strand at 5921.677 kb on - strand at 5921.677 kb on - strand at 5921.696 kb on + strand at 5921.696 kb on + strand at 5922.000 kb on + strand at 5922.000 kb on + strand, within AO353_27025 at 5922.000 kb on + strand, within AO353_27025
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 5,919,220 + +2.4 5,919,251 + -1.1 5,919,400 + AO353_27010 0.23 -0.9 5,919,400 + AO353_27010 0.23 -0.1 5,919,400 + AO353_27010 0.23 -0.9 5,919,401 - AO353_27010 0.23 +0.5 5,919,455 - AO353_27010 0.31 -2.6 5,919,455 - AO353_27010 0.31 -1.7 5,919,511 - AO353_27010 0.40 -0.9 5,919,511 - AO353_27010 0.40 -0.4 5,919,694 - AO353_27010 0.67 -1.7 5,919,981 + -0.5 5,919,987 + +1.5 5,919,987 + -2.5 5,919,987 + +0.0 5,919,988 - +2.0 5,919,988 - -0.7 5,919,988 - -1.4 5,919,988 - +1.7 5,919,997 - +0.5 5,919,997 - +0.5 5,919,997 - +1.7 5,920,097 + +1.1 5,920,098 - -1.5 5,920,098 - -0.3 5,920,121 + AO353_27015 0.10 +3.2 5,920,121 + AO353_27015 0.10 -1.1 5,920,121 + AO353_27015 0.10 -0.5 5,920,121 + AO353_27015 0.10 -1.1 5,920,122 - AO353_27015 0.10 -1.9 5,920,122 - AO353_27015 0.10 -2.0 5,920,122 - AO353_27015 0.10 -0.1 5,920,122 - AO353_27015 0.10 -1.4 5,920,406 + AO353_27015 0.36 +0.5 5,920,407 - AO353_27015 0.36 -1.3 5,920,407 - AO353_27015 0.36 +1.5 5,920,478 + AO353_27015 0.42 +1.0 5,920,478 + AO353_27015 0.42 -0.9 5,920,479 - AO353_27015 0.42 -2.0 5,920,479 - AO353_27015 0.42 -0.9 5,920,479 - AO353_27015 0.42 +3.0 5,920,511 + AO353_27015 0.45 -0.9 5,920,511 + AO353_27015 0.45 -1.9 5,920,511 + AO353_27015 0.45 +2.5 5,920,512 - AO353_27015 0.45 -0.5 5,920,512 - AO353_27015 0.45 -0.9 5,920,858 + AO353_27015 0.77 -0.1 5,921,062 + -1.1 5,921,063 - +0.8 5,921,084 + -0.6 5,921,084 + -0.6 5,921,084 + +0.2 5,921,084 + -0.6 5,921,084 + +0.1 5,921,084 + +0.4 5,921,084 + +1.2 5,921,084 + -2.0 5,921,085 - -0.1 5,921,085 - +1.1 5,921,085 - -1.6 5,921,085 - -1.1 5,921,085 - +1.4 5,921,085 - -1.6 5,921,085 - +1.6 5,921,085 - -0.1 5,921,085 - -1.9 5,921,085 - -1.6 5,921,085 - -0.6 5,921,085 - +1.9 5,921,085 - -2.1 5,921,085 - -0.1 5,921,085 - -1.4 5,921,085 - +2.8 5,921,085 - +0.0 5,921,111 + +0.4 5,921,111 + +0.3 5,921,111 + +1.1 5,921,111 + -1.9 5,921,112 - +1.4 5,921,234 + AO353_27020 0.36 +0.4 5,921,320 + AO353_27020 0.55 +1.8 5,921,320 + AO353_27020 0.55 +1.1 5,921,321 - AO353_27020 0.55 -1.1 5,921,321 - +0.4 5,921,321 - AO353_27020 0.55 -1.4 5,921,333 + AO353_27020 0.58 +2.0 5,921,333 + AO353_27020 0.58 -1.4 5,921,334 - AO353_27020 0.58 -0.6 5,921,342 + AO353_27020 0.60 -1.4 5,921,343 - AO353_27020 0.60 -0.2 5,921,343 - AO353_27020 0.60 -1.4 5,921,343 - AO353_27020 0.60 -1.4 5,921,374 - AO353_27020 0.67 -1.6 5,921,463 + AO353_27020 0.86 +1.6 5,921,463 + AO353_27020 0.86 -1.8 5,921,469 + AO353_27020 0.87 +2.0 5,921,469 + AO353_27020 0.87 +0.8 5,921,469 + AO353_27020 0.87 -1.6 5,921,469 + AO353_27020 0.87 +0.9 5,921,469 + AO353_27020 0.87 +2.8 5,921,469 + AO353_27020 0.87 -0.1 5,921,469 + AO353_27020 0.87 +0.3 5,921,469 + AO353_27020 0.87 -0.6 5,921,470 - AO353_27020 0.88 +0.1 5,921,470 - AO353_27020 0.88 -1.1 5,921,470 - AO353_27020 0.88 +2.2 5,921,473 + AO353_27020 0.88 -1.7 5,921,473 + AO353_27020 0.88 +1.4 5,921,473 + AO353_27020 0.88 +1.6 5,921,473 + AO353_27020 0.88 -1.5 5,921,473 + AO353_27020 0.88 -1.7 5,921,473 + AO353_27020 0.88 -1.9 5,921,473 + AO353_27020 0.88 +3.4 5,921,474 - AO353_27020 0.88 -2.9 5,921,474 - AO353_27020 0.88 +3.0 5,921,474 - AO353_27020 0.88 +1.0 5,921,474 - AO353_27020 0.88 +0.2 5,921,474 - AO353_27020 0.88 +0.4 5,921,474 - AO353_27020 0.88 -1.1 5,921,488 + -1.3 5,921,489 - -1.7 5,921,612 + +1.6 5,921,612 + -0.6 5,921,613 - -1.7 5,921,613 - -0.6 5,921,643 - -2.3 5,921,676 + -1.4 5,921,676 + +3.4 5,921,677 - -0.9 5,921,677 - -1.1 5,921,677 - -0.9 5,921,696 + -2.0 5,921,696 + +0.3 5,922,000 + +1.4 5,922,000 + AO353_27025 0.27 +4.4 5,922,000 + AO353_27025 0.27 -0.1
Or see this region's nucleotide sequence