Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25930

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25920 and AO353_25925 are separated by 81 nucleotidesAO353_25925 and AO353_25930 are separated by 107 nucleotidesAO353_25930 and AO353_25935 are separated by 171 nucleotidesAO353_25935 and AO353_25940 are separated by 89 nucleotidesAO353_25940 and AO353_25945 overlap by 4 nucleotides AO353_25920: AO353_25920 - hypothetical protein, at 5,717,322 to 5,717,999 _25920 AO353_25925: AO353_25925 - hypothetical protein, at 5,718,081 to 5,718,614 _25925 AO353_25930: AO353_25930 - hypothetical protein, at 5,718,722 to 5,719,279 _25930 AO353_25935: AO353_25935 - hypothetical protein, at 5,719,451 to 5,719,714 _25935 AO353_25940: AO353_25940 - hypothetical protein, at 5,719,804 to 5,720,202 _25940 AO353_25945: AO353_25945 - hypothetical protein, at 5,720,199 to 5,720,471 _25945 Position (kb) 5718 5719 5720Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 5717.772 kb on - strand, within AO353_25920at 5717.791 kb on + strand, within AO353_25920at 5717.792 kb on - strand, within AO353_25920at 5717.795 kb on + strand, within AO353_25920at 5717.795 kb on + strand, within AO353_25920at 5717.795 kb on + strand, within AO353_25920at 5717.795 kb on + strand, within AO353_25920at 5717.795 kb on + strand, within AO353_25920at 5717.795 kb on + strand, within AO353_25920at 5717.795 kb on + strand, within AO353_25920at 5717.796 kb on - strand, within AO353_25920at 5717.796 kb on - strand, within AO353_25920at 5717.796 kb on - strand, within AO353_25920at 5717.796 kb on - strand, within AO353_25920at 5717.844 kb on + strand, within AO353_25920at 5717.844 kb on + strand, within AO353_25920at 5717.845 kb on - strand, within AO353_25920at 5717.845 kb on - strandat 5717.868 kb on + strand, within AO353_25920at 5717.869 kb on - strand, within AO353_25920at 5717.886 kb on + strand, within AO353_25920at 5717.886 kb on + strand, within AO353_25920at 5717.886 kb on + strand, within AO353_25920at 5717.886 kb on + strand, within AO353_25920at 5717.904 kb on - strand, within AO353_25920at 5717.904 kb on - strand, within AO353_25920at 5717.929 kb on - strand, within AO353_25920at 5717.929 kb on - strand, within AO353_25920at 5718.062 kb on + strandat 5718.065 kb on + strandat 5718.065 kb on + strandat 5718.065 kb on + strandat 5718.099 kb on + strandat 5718.099 kb on + strandat 5718.099 kb on + strandat 5718.101 kb on + strandat 5718.101 kb on + strandat 5718.101 kb on + strandat 5718.101 kb on + strandat 5718.102 kb on - strandat 5718.102 kb on - strandat 5718.102 kb on - strandat 5718.102 kb on - strandat 5718.102 kb on - strandat 5718.133 kb on - strandat 5718.447 kb on + strand, within AO353_25925at 5718.448 kb on - strand, within AO353_25925at 5718.448 kb on - strand, within AO353_25925at 5718.570 kb on - strandat 5718.594 kb on - strandat 5718.601 kb on + strandat 5718.601 kb on + strandat 5718.601 kb on + strandat 5718.602 kb on - strandat 5718.673 kb on + strandat 5718.676 kb on + strandat 5718.676 kb on + strandat 5718.677 kb on - strandat 5718.677 kb on - strandat 5718.712 kb on + strandat 5718.757 kb on - strandat 5718.766 kb on - strandat 5718.766 kb on - strandat 5718.766 kb on - strandat 5718.770 kb on - strandat 5718.793 kb on - strand, within AO353_25930at 5718.795 kb on + strand, within AO353_25930at 5718.795 kb on + strandat 5718.795 kb on + strand, within AO353_25930at 5718.796 kb on - strand, within AO353_25930at 5718.847 kb on - strand, within AO353_25930at 5718.847 kb on - strand, within AO353_25930at 5718.872 kb on + strand, within AO353_25930at 5718.872 kb on + strand, within AO353_25930at 5718.872 kb on + strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.878 kb on + strand, within AO353_25930at 5718.878 kb on + strand, within AO353_25930at 5718.879 kb on - strand, within AO353_25930at 5718.879 kb on - strand, within AO353_25930at 5718.879 kb on - strand, within AO353_25930at 5718.910 kb on + strand, within AO353_25930at 5718.911 kb on - strand, within AO353_25930at 5718.940 kb on + strand, within AO353_25930at 5718.941 kb on - strand, within AO353_25930at 5718.941 kb on - strand, within AO353_25930at 5718.980 kb on - strand, within AO353_25930at 5718.980 kb on - strand, within AO353_25930at 5718.981 kb on + strand, within AO353_25930at 5718.981 kb on + strand, within AO353_25930at 5718.982 kb on - strand, within AO353_25930at 5718.982 kb on - strand, within AO353_25930at 5718.982 kb on - strand, within AO353_25930at 5718.988 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.043 kb on + strand, within AO353_25930at 5719.065 kb on + strand, within AO353_25930at 5719.065 kb on + strand, within AO353_25930at 5719.066 kb on - strand, within AO353_25930at 5719.172 kb on + strand, within AO353_25930at 5719.172 kb on + strand, within AO353_25930at 5719.173 kb on - strand, within AO353_25930at 5719.173 kb on - strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.200 kb on - strand, within AO353_25930at 5719.200 kb on - strand, within AO353_25930at 5719.219 kb on - strand, within AO353_25930at 5719.277 kb on + strandat 5719.277 kb on + strandat 5719.278 kb on - strandat 5719.294 kb on + strandat 5719.294 kb on + strandat 5719.345 kb on + strandat 5719.351 kb on + strandat 5719.351 kb on + strandat 5719.463 kb on - strandat 5719.547 kb on + strand, within AO353_25935at 5719.554 kb on - strand, within AO353_25935at 5719.658 kb on - strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strandat 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.766 kb on + strandat 5719.766 kb on + strandat 5719.766 kb on + strandat 5719.767 kb on - strandat 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.879 kb on - strand, within AO353_25940at 5719.879 kb on - strand, within AO353_25940at 5719.880 kb on + strand, within AO353_25940at 5719.881 kb on - strand, within AO353_25940at 5719.984 kb on + strand, within AO353_25940at 5719.984 kb on + strand, within AO353_25940at 5720.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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5,717,772 - AO353_25920 0.66 +1.5
5,717,791 + AO353_25920 0.69 +0.4
5,717,792 - AO353_25920 0.69 +1.1
5,717,795 + AO353_25920 0.70 +1.1
5,717,795 + AO353_25920 0.70 -1.8
5,717,795 + AO353_25920 0.70 -1.4
5,717,795 + AO353_25920 0.70 -1.0
5,717,795 + AO353_25920 0.70 -0.5
5,717,795 + AO353_25920 0.70 +2.6
5,717,795 + AO353_25920 0.70 +0.4
5,717,796 - AO353_25920 0.70 -0.6
5,717,796 - AO353_25920 0.70 -0.4
5,717,796 - AO353_25920 0.70 -1.6
5,717,796 - AO353_25920 0.70 +3.2
5,717,844 + AO353_25920 0.77 -0.2
5,717,844 + AO353_25920 0.77 -0.2
5,717,845 - AO353_25920 0.77 -1.2
5,717,845 - +0.4
5,717,868 + AO353_25920 0.81 +1.4
5,717,869 - AO353_25920 0.81 +3.0
5,717,886 + AO353_25920 0.83 -1.4
5,717,886 + AO353_25920 0.83 -0.2
5,717,886 + AO353_25920 0.83 +2.9
5,717,886 + AO353_25920 0.83 +1.0
5,717,904 - AO353_25920 0.86 +0.5
5,717,904 - AO353_25920 0.86 -0.4
5,717,929 - AO353_25920 0.90 +0.4
5,717,929 - AO353_25920 0.90 +4.0
5,718,062 + -1.4
5,718,065 + -0.6
5,718,065 + -0.6
5,718,065 + +0.4
5,718,099 + +0.9
5,718,099 + +2.5
5,718,099 + +1.4
5,718,101 + -2.7
5,718,101 + -2.5
5,718,101 + +1.0
5,718,101 + -0.6
5,718,102 - +0.9
5,718,102 - -1.6
5,718,102 - +1.0
5,718,102 - -1.0
5,718,102 - -1.4
5,718,133 - -1.2
5,718,447 + AO353_25925 0.69 +0.5
5,718,448 - AO353_25925 0.69 +0.4
5,718,448 - AO353_25925 0.69 -1.4
5,718,570 - +1.2
5,718,594 - -0.6
5,718,601 + -2.7
5,718,601 + +0.0
5,718,601 + +3.2
5,718,602 - -0.2
5,718,673 + +2.1
5,718,676 + -2.1
5,718,676 + +1.4
5,718,677 - +0.4
5,718,677 - -1.6
5,718,712 + +1.4
5,718,757 - +1.4
5,718,766 - -2.6
5,718,766 - +0.4
5,718,766 - -2.0
5,718,770 - +0.8
5,718,793 - AO353_25930 0.13 -0.6
5,718,795 + AO353_25930 0.13 -1.8
5,718,795 + -0.6
5,718,795 + AO353_25930 0.13 +0.9
5,718,796 - AO353_25930 0.13 +0.2
5,718,847 - AO353_25930 0.22 -1.6
5,718,847 - AO353_25930 0.22 +1.4
5,718,872 + AO353_25930 0.27 -2.0
5,718,872 + AO353_25930 0.27 -1.2
5,718,872 + AO353_25930 0.27 -1.2
5,718,873 - AO353_25930 0.27 +2.4
5,718,873 - AO353_25930 0.27 -1.6
5,718,873 - AO353_25930 0.27 -1.0
5,718,873 - AO353_25930 0.27 +5.2
5,718,878 + AO353_25930 0.28 -0.2
5,718,878 + AO353_25930 0.28 +1.0
5,718,879 - AO353_25930 0.28 -0.6
5,718,879 - AO353_25930 0.28 -1.6
5,718,879 - AO353_25930 0.28 -2.2
5,718,910 + AO353_25930 0.34 +2.4
5,718,911 - AO353_25930 0.34 +0.6
5,718,940 + AO353_25930 0.39 -2.4
5,718,941 - AO353_25930 0.39 +1.4
5,718,941 - AO353_25930 0.39 +1.3
5,718,980 - AO353_25930 0.46 +2.2
5,718,980 - AO353_25930 0.46 -1.4
5,718,981 + AO353_25930 0.46 +1.8
5,718,981 + AO353_25930 0.46 -0.2
5,718,982 - AO353_25930 0.47 -0.2
5,718,982 - AO353_25930 0.47 +0.4
5,718,982 - AO353_25930 0.47 -1.0
5,718,988 - AO353_25930 0.48 -2.0
5,719,020 - AO353_25930 0.53 -0.6
5,719,020 - AO353_25930 0.53 +1.4
5,719,020 - AO353_25930 0.53 +0.0
5,719,020 - AO353_25930 0.53 -0.6
5,719,043 + AO353_25930 0.58 -0.8
5,719,065 + AO353_25930 0.61 +1.8
5,719,065 + AO353_25930 0.61 +1.8
5,719,066 - AO353_25930 0.62 -1.2
5,719,172 + AO353_25930 0.81 +0.0
5,719,172 + AO353_25930 0.81 +0.2
5,719,173 - AO353_25930 0.81 -1.8
5,719,173 - AO353_25930 0.81 -1.0
5,719,199 + AO353_25930 0.85 -1.8
5,719,199 + AO353_25930 0.85 -1.2
5,719,199 + AO353_25930 0.85 -1.6
5,719,199 + AO353_25930 0.85 +1.2
5,719,199 + AO353_25930 0.85 -1.0
5,719,199 + AO353_25930 0.85 +0.6
5,719,199 + AO353_25930 0.85 -0.6
5,719,199 + AO353_25930 0.85 -2.2
5,719,200 - AO353_25930 0.86 -1.0
5,719,200 - AO353_25930 0.86 +0.5
5,719,219 - AO353_25930 0.89 -1.2
5,719,277 + -2.2
5,719,277 + -1.0
5,719,278 - -1.0
5,719,294 + -2.1
5,719,294 + +0.5
5,719,345 + -2.1
5,719,351 + +0.1
5,719,351 + +1.6
5,719,463 - +0.2
5,719,547 + AO353_25935 0.36 +0.4
5,719,554 - AO353_25935 0.39 +1.4
5,719,658 - AO353_25935 0.78 -1.6
5,719,667 + AO353_25935 0.82 -0.6
5,719,667 + AO353_25935 0.82 -1.0
5,719,667 + AO353_25935 0.82 +1.5
5,719,667 + AO353_25935 0.82 -2.1
5,719,667 + AO353_25935 0.82 -1.6
5,719,667 + AO353_25935 0.82 -2.1
5,719,667 + AO353_25935 0.82 +0.4
5,719,667 + AO353_25935 0.82 -1.6
5,719,667 + AO353_25935 0.82 +3.1
5,719,667 + AO353_25935 0.82 +1.5
5,719,667 + AO353_25935 0.82 -1.2
5,719,668 - AO353_25935 0.82 -1.5
5,719,668 - +0.4
5,719,668 - AO353_25935 0.82 +1.7
5,719,668 - AO353_25935 0.82 +1.7
5,719,668 - AO353_25935 0.82 +0.9
5,719,668 - AO353_25935 0.82 -0.3
5,719,668 - AO353_25935 0.82 -1.9
5,719,668 - AO353_25935 0.82 -2.2
5,719,668 - AO353_25935 0.82 -0.5
5,719,766 + -0.8
5,719,766 + -2.0
5,719,766 + -1.0
5,719,767 - -1.0
5,719,878 + AO353_25940 0.19 +1.1
5,719,878 + AO353_25940 0.19 +0.4
5,719,878 + AO353_25940 0.19 -1.5
5,719,878 + AO353_25940 0.19 -0.1
5,719,878 + AO353_25940 0.19 -1.6
5,719,878 + AO353_25940 0.19 +1.5
5,719,879 - AO353_25940 0.19 +2.7
5,719,879 - AO353_25940 0.19 -0.6
5,719,880 + AO353_25940 0.19 -0.6
5,719,881 - AO353_25940 0.19 -1.2
5,719,984 + AO353_25940 0.45 +1.4
5,719,984 + AO353_25940 0.45 +2.8
5,720,201 - -2.2

Or see this region's nucleotide sequence