Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23745

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23740 and AO353_23745 are separated by 335 nucleotidesAO353_23745 and AO353_23750 are separated by 177 nucleotides AO353_23740: AO353_23740 - autotransporter subunit beta, at 5,203,822 to 5,204,883 _23740 AO353_23745: AO353_23745 - acetylglucosaminylphosphatidylinositol deacetylase, at 5,205,219 to 5,205,977 _23745 AO353_23750: AO353_23750 - glycogen debranching protein, at 5,206,155 to 5,208,314 _23750 Position (kb) 5205 5206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5204.315 kb on + strand, within AO353_23740at 5204.385 kb on - strand, within AO353_23740at 5204.422 kb on - strand, within AO353_23740at 5204.422 kb on - strand, within AO353_23740at 5204.422 kb on - strand, within AO353_23740at 5204.481 kb on + strand, within AO353_23740at 5204.482 kb on - strand, within AO353_23740at 5204.533 kb on - strand, within AO353_23740at 5204.624 kb on + strand, within AO353_23740at 5204.712 kb on + strand, within AO353_23740at 5204.713 kb on - strand, within AO353_23740at 5204.718 kb on + strand, within AO353_23740at 5204.719 kb on - strand, within AO353_23740at 5204.841 kb on - strandat 5204.841 kb on - strandat 5204.841 kb on - strandat 5204.892 kb on - strandat 5205.017 kb on + strandat 5205.017 kb on + strandat 5205.032 kb on + strandat 5205.032 kb on + strandat 5205.032 kb on + strandat 5205.033 kb on - strandat 5205.033 kb on - strandat 5205.039 kb on + strandat 5205.043 kb on + strandat 5205.044 kb on - strandat 5205.135 kb on - strandat 5205.231 kb on + strandat 5205.232 kb on - strandat 5205.238 kb on + strandat 5205.322 kb on + strand, within AO353_23745at 5205.496 kb on - strand, within AO353_23745at 5205.496 kb on - strandat 5205.644 kb on + strand, within AO353_23745at 5205.645 kb on - strand, within AO353_23745at 5205.879 kb on - strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.884 kb on + strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.885 kb on - strand, within AO353_23745at 5205.905 kb on + strandat 5205.905 kb on + strandat 5205.905 kb on + strandat 5205.906 kb on - strandat 5205.984 kb on - strandat 5205.984 kb on - strandat 5205.999 kb on + strandat 5206.000 kb on - strandat 5206.053 kb on + strandat 5206.054 kb on - strandat 5206.062 kb on + strandat 5206.062 kb on + strandat 5206.062 kb on + strandat 5206.062 kb on + strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.063 kb on - strandat 5206.123 kb on - strandat 5206.214 kb on - strandat 5206.214 kb on - strandat 5206.214 kb on - strandat 5206.359 kb on - strandat 5206.411 kb on - strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.516 kb on + strand, within AO353_23750at 5206.517 kb on - strand, within AO353_23750at 5206.658 kb on - strand, within AO353_23750at 5206.752 kb on - strand, within AO353_23750at 5206.752 kb on - strand, within AO353_23750at 5206.835 kb on + strand, within AO353_23750at 5206.835 kb on + strand, within AO353_23750at 5206.836 kb on - strand, within AO353_23750at 5206.836 kb on - strand, within AO353_23750at 5206.838 kb on + strand, within AO353_23750at 5206.838 kb on + strand, within AO353_23750at 5206.838 kb on + strand, within AO353_23750at 5206.839 kb on - strand, within AO353_23750at 5206.885 kb on + strand, within AO353_23750at 5206.886 kb on - strand, within AO353_23750

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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5,204,315 + AO353_23740 0.46 +0.1
5,204,385 - AO353_23740 0.53 -1.1
5,204,422 - AO353_23740 0.56 -1.6
5,204,422 - AO353_23740 0.56 +0.4
5,204,422 - AO353_23740 0.56 -1.1
5,204,481 + AO353_23740 0.62 -0.4
5,204,482 - AO353_23740 0.62 -0.4
5,204,533 - AO353_23740 0.67 -1.6
5,204,624 + AO353_23740 0.76 +1.2
5,204,712 + AO353_23740 0.84 +0.4
5,204,713 - AO353_23740 0.84 -0.9
5,204,718 + AO353_23740 0.84 +1.2
5,204,719 - AO353_23740 0.84 -0.1
5,204,841 - -2.1
5,204,841 - +1.4
5,204,841 - -1.6
5,204,892 - -1.4
5,205,017 + +1.4
5,205,017 + +0.3
5,205,032 + -0.3
5,205,032 + +0.4
5,205,032 + +0.4
5,205,033 - +2.4
5,205,033 - -2.0
5,205,039 + -1.6
5,205,043 + -3.0
5,205,044 - -0.7
5,205,135 - +1.1
5,205,231 + +1.3
5,205,232 - -2.0
5,205,238 + -0.1
5,205,322 + AO353_23745 0.14 -0.4
5,205,496 - AO353_23745 0.36 +0.6
5,205,496 - -0.6
5,205,644 + AO353_23745 0.56 +2.4
5,205,645 - AO353_23745 0.56 +1.0
5,205,879 - AO353_23745 0.87 -0.9
5,205,884 + AO353_23745 0.88 -1.4
5,205,884 + AO353_23745 0.88 -0.4
5,205,884 + AO353_23745 0.88 -1.7
5,205,884 + AO353_23745 0.88 -0.6
5,205,884 + AO353_23745 0.88 -0.1
5,205,884 + AO353_23745 0.88 +0.4
5,205,884 + AO353_23745 0.88 -2.0
5,205,884 + AO353_23745 0.88 -2.1
5,205,884 + AO353_23745 0.88 -1.6
5,205,885 - AO353_23745 0.88 -1.1
5,205,885 - AO353_23745 0.88 +0.1
5,205,885 - AO353_23745 0.88 +1.4
5,205,885 - AO353_23745 0.88 +0.4
5,205,885 - AO353_23745 0.88 +0.4
5,205,885 - AO353_23745 0.88 -0.6
5,205,885 - AO353_23745 0.88 -1.6
5,205,885 - AO353_23745 0.88 -0.9
5,205,885 - AO353_23745 0.88 +0.7
5,205,885 - AO353_23745 0.88 +1.9
5,205,905 + -0.9
5,205,905 + -0.7
5,205,905 + +1.8
5,205,906 - +2.1
5,205,984 - -1.4
5,205,984 - +1.1
5,205,999 + -0.6
5,206,000 - -3.1
5,206,053 + +1.5
5,206,054 - -1.1
5,206,062 + -0.6
5,206,062 + +0.4
5,206,062 + +3.1
5,206,062 + -1.1
5,206,063 - -0.1
5,206,063 - +0.6
5,206,063 - +2.0
5,206,063 - -1.6
5,206,063 - +3.4
5,206,063 - +1.4
5,206,063 - +1.6
5,206,063 - -1.8
5,206,063 - +0.4
5,206,123 - +3.0
5,206,214 - +1.6
5,206,214 - +1.0
5,206,214 - -0.9
5,206,359 - -0.6
5,206,411 - AO353_23750 0.12 +1.8
5,206,516 + AO353_23750 0.17 -1.9
5,206,516 + AO353_23750 0.17 +0.3
5,206,516 + AO353_23750 0.17 +0.4
5,206,516 + AO353_23750 0.17 +0.3
5,206,517 - AO353_23750 0.17 -2.0
5,206,658 - AO353_23750 0.23 -1.6
5,206,752 - AO353_23750 0.28 -0.9
5,206,752 - AO353_23750 0.28 -1.4
5,206,835 + AO353_23750 0.31 +1.0
5,206,835 + AO353_23750 0.31 +1.0
5,206,836 - AO353_23750 0.32 -2.1
5,206,836 - AO353_23750 0.32 +2.2
5,206,838 + AO353_23750 0.32 +0.9
5,206,838 + AO353_23750 0.32 -0.4
5,206,838 + AO353_23750 0.32 +0.5
5,206,839 - AO353_23750 0.32 -1.6
5,206,885 + AO353_23750 0.34 +0.5
5,206,886 - AO353_23750 0.34 +0.4

Or see this region's nucleotide sequence