Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23195

Experiment: Doxycycline hyclate 0.0006 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0006 mg/ml
5,087,760	+		AO353_23190	0.26	-0.6
5,087,760	+		AO353_23190	0.26	-1.4
5,087,761	-		AO353_23190	0.26	+1.0
5,087,761	-		AO353_23190	0.26	+2.4
5,087,761	-		AO353_23190	0.26	-1.9
5,087,852	+		AO353_23190	0.35	+3.1
5,087,852	+		AO353_23190	0.35	-0.6
5,087,852	+		AO353_23190	0.35	-0.2
5,087,853	-				-0.2
5,087,853	-		AO353_23190	0.35	-1.2
5,087,853	-		AO353_23190	0.35	+1.7
5,088,027	+		AO353_23190	0.51	-0.6
5,088,027	+		AO353_23190	0.51	-0.4
5,088,027	+		AO353_23190	0.51	-1.2
5,088,028	-		AO353_23190	0.51	-0.2
5,088,028	-		AO353_23190	0.51	-1.8
5,088,028	-				+0.4
5,088,028	-		AO353_23190	0.51	+2.2
5,088,028	-		AO353_23190	0.51	+0.4
5,088,028	-		AO353_23190	0.51	-0.9
5,088,028	-		AO353_23190	0.51	+2.2
5,088,028	-		AO353_23190	0.51	+0.8
5,088,028	-		AO353_23190	0.51	-0.2
5,088,213	+		AO353_23190	0.69	-0.6
5,088,213	+		AO353_23190	0.69	+2.4
5,088,213	+		AO353_23190	0.69	-1.6
5,088,213	+		AO353_23190	0.69	+0.4
5,088,213	+		AO353_23190	0.69	+0.2
5,088,213	+		AO353_23190	0.69	+0.6
5,088,214	-		AO353_23190	0.69	+1.1
5,088,214	-		AO353_23190	0.69	-1.8
5,088,214	-		AO353_23190	0.69	+2.2
5,088,214	-		AO353_23190	0.69	+2.4
5,088,288	+		AO353_23190	0.76	-0.2
5,088,288	+		AO353_23190	0.76	+0.6
5,088,289	-		AO353_23190	0.76	-0.9
5,088,378	+		AO353_23190	0.84	-1.8
5,088,378	+		AO353_23190	0.84	+2.3
5,088,379	-		AO353_23190	0.84	+2.0
5,088,379	-		AO353_23190	0.84	-0.6
5,088,379	-		AO353_23190	0.84	+0.4
5,088,379	-		AO353_23190	0.84	+1.4
5,088,471	-				-1.4
5,088,561	+				+0.7
5,088,587	+				-0.6
5,088,587	+				+0.2
5,088,588	-				+2.6
5,088,588	-				-1.9
5,088,601	+				-1.4
5,088,601	+				-0.8
5,088,601	+				+3.4
5,088,601	+				+0.8
5,088,601	+				+0.9
5,088,601	+				-0.6
5,088,602	-				-2.0
5,088,602	-				+0.3
5,088,602	-				-2.0
5,088,602	-				-0.6
5,088,602	-				-0.6
5,088,602	-				-1.4
5,088,602	-				-1.8
5,088,602	-				+2.7
5,088,603	+				+3.4
5,088,603	+				-0.9
5,088,603	+				-1.6
5,088,603	+				-0.2
5,088,603	+				+1.6
5,088,603	+				-1.9
5,088,603	+				+2.4
5,088,603	+				-1.2
5,088,603	+				+0.1
5,088,604	-				-0.2
5,088,604	-				-0.6
5,088,604	-				+1.4
5,088,627	+				+1.1
5,088,627	+				+1.2
5,088,627	+				-0.9
5,088,628	-				+0.4
5,088,628	-				-1.4
5,088,659	+				-0.6
5,088,659	+				+2.0
5,088,660	-				-1.4
5,088,694	+				+2.5
5,088,694	+				+0.4
5,088,694	+				-1.9
5,088,694	+				-1.2
5,088,695	-				-0.9
5,088,695	-				+0.4
5,088,724	-				-1.8
5,088,816	-		AO353_23195	0.14	-0.2
5,088,822	-		AO353_23195	0.15	-0.6
5,088,894	+		AO353_23195	0.23	-0.9
5,088,894	+		AO353_23195	0.23	-0.8
5,088,895	-		AO353_23195	0.23	-2.7
5,088,952	+		AO353_23195	0.29	-1.4
5,089,199	+		AO353_23195	0.56	-0.2
5,089,199	+		AO353_23195	0.56	-0.5
5,089,200	-		AO353_23195	0.56	-2.3
5,089,200	-		AO353_23195	0.56	+1.1
5,089,263	+		AO353_23195	0.63	-1.2
5,089,263	+		AO353_23195	0.63	-1.8
5,089,264	-		AO353_23195	0.63	+0.4
5,089,264	-		AO353_23195	0.63	+0.8
5,089,264	-		AO353_23195	0.63	+1.0
5,089,286	+		AO353_23195	0.65	-1.2
5,089,286	+		AO353_23195	0.65	+0.4
5,089,286	+		AO353_23195	0.65	+1.4
5,089,287	-		AO353_23195	0.65	-0.6
5,089,287	-		AO353_23195	0.65	-1.4
5,089,287	-		AO353_23195	0.65	-0.6
5,089,287	-		AO353_23195	0.65	-0.6
5,089,289	+		AO353_23195	0.66	+0.4
5,089,289	+		AO353_23195	0.66	-2.0
5,089,343	+		AO353_23195	0.71	+2.0
5,089,386	+		AO353_23195	0.76	+3.7
5,089,386	+		AO353_23195	0.76	-0.2
5,089,387	-		AO353_23195	0.76	-1.0
5,089,508	+		AO353_23195	0.89	+0.8
5,089,508	+		AO353_23195	0.89	+2.7
5,089,508	+		AO353_23195	0.89	-1.8
5,089,540	+				-1.6
5,089,583	+				+1.2
5,089,583	+				+2.2
5,089,628	-				+1.4
5,089,628	-				+0.7
5,089,628	-				+1.4
5,089,628	-				+1.9
5,089,652	+				+0.7
5,089,710	+				-0.2
5,089,711	-				-0.2
5,089,833	+		AO353_23200	0.17	-0.6
5,089,833	+		AO353_23200	0.17	-0.3
5,089,833	+				-0.2
5,089,833	+		AO353_23200	0.17	+1.3
5,090,055	+		AO353_23200	0.36	-1.2
5,090,055	+		AO353_23200	0.36	+2.2
5,090,232	+		AO353_23200	0.51	+1.6
5,090,232	+		AO353_23200	0.51	-0.9
5,090,232	+		AO353_23200	0.51	+1.1
5,090,232	+		AO353_23200	0.51	-1.2
5,090,232	+		AO353_23200	0.51	-1.2
5,090,232	+		AO353_23200	0.51	-1.8
5,090,232	+		AO353_23200	0.51	+3.0
5,090,232	+		AO353_23200	0.51	+0.7
5,090,233	-		AO353_23200	0.51	+0.4
5,090,233	-		AO353_23200	0.51	-0.6
5,090,233	-		AO353_23200	0.51	-2.5
5,090,233	-		AO353_23200	0.51	+3.1
5,090,265	+		AO353_23200	0.54	+1.6
5,090,265	+		AO353_23200	0.54	-1.8
5,090,265	+		AO353_23200	0.54	+2.0
5,090,266	-		AO353_23200	0.54	-0.6
5,090,266	-		AO353_23200	0.54	+0.8
5,090,266	-		AO353_23200	0.54	+0.4
5,090,315	+		AO353_23200	0.58	-1.8
5,090,315	+		AO353_23200	0.58	-0.9
5,090,315	+		AO353_23200	0.58	+0.6
5,090,315	+		AO353_23200	0.58	+3.5
5,090,315	+		AO353_23200	0.58	+0.9
5,090,316	-		AO353_23200	0.58	-0.6
5,090,316	-		AO353_23200	0.58	-1.4
5,090,316	-		AO353_23200	0.58	+2.2
5,090,316	-		AO353_23200	0.58	+0.4
5,090,364	+		AO353_23200	0.63	+2.0
5,090,365	-		AO353_23200	0.63	-1.4
5,090,365	-		AO353_23200	0.63	-2.3
5,090,379	+		AO353_23200	0.64	+0.6
5,090,379	+		AO353_23200	0.64	-0.2
5,090,379	+		AO353_23200	0.64	-0.2
5,090,379	+		AO353_23200	0.64	+4.6
5,090,380	-		AO353_23200	0.64	+1.1