Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14785 and AO353_14790 are separated by 0 nucleotides AO353_14790 and AO353_14795 overlap by 7 nucleotides AO353_14795 and AO353_14800 overlap by 8 nucleotides AO353_14800 and AO353_14805 are separated by 116 nucleotides
AO353_14785: AO353_14785 - peptide chain release factor 1, at 3,274,809 to 3,275,891
_14785
AO353_14790: AO353_14790 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 3,275,892 to 3,276,722
_14790
AO353_14795: AO353_14795 - molybdopterin-synthase adenylyltransferase, at 3,276,716 to 3,277,471
_14795
AO353_14800: AO353_14800 - glutamate racemase, at 3,277,464 to 3,278,255
_14800
AO353_14805: AO353_14805 - lipid A 3-O-deacylase, at 3,278,372 to 3,278,890
_14805
Position (kb)
3276
3277
3278 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3275.881 kb on + strand at 3275.882 kb on - strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.889 kb on + strand at 3275.914 kb on + strand at 3275.914 kb on + strand at 3275.914 kb on + strand at 3276.098 kb on + strand, within AO353_14790 at 3276.743 kb on + strand at 3276.745 kb on + strand at 3276.854 kb on + strand, within AO353_14795 at 3277.000 kb on - strand, within AO353_14795 at 3277.137 kb on + strand, within AO353_14795 at 3277.137 kb on + strand, within AO353_14795 at 3277.137 kb on + strand, within AO353_14795 at 3277.138 kb on - strand, within AO353_14795 at 3277.138 kb on - strand, within AO353_14795 at 3277.138 kb on - strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3277.383 kb on + strand, within AO353_14795 at 3278.201 kb on + strand at 3278.201 kb on + strand at 3278.201 kb on + strand at 3278.202 kb on - strand at 3278.202 kb on - strand at 3278.222 kb on + strand at 3278.223 kb on - strand at 3278.254 kb on - strand at 3278.254 kb on - strand at 3278.294 kb on + strand at 3278.294 kb on + strand at 3278.294 kb on + strand at 3278.295 kb on - strand at 3278.295 kb on - strand at 3278.314 kb on + strand at 3278.314 kb on + strand at 3278.314 kb on + strand at 3278.314 kb on + strand at 3278.314 kb on + strand at 3278.314 kb on + strand at 3278.314 kb on + strand at 3278.314 kb on + strand at 3278.315 kb on - strand at 3278.315 kb on - strand at 3278.315 kb on - strand at 3278.315 kb on - strand at 3278.315 kb on - strand at 3278.315 kb on - strand at 3278.325 kb on + strand at 3278.325 kb on + strand at 3278.326 kb on - strand at 3278.326 kb on - strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.346 kb on + strand at 3278.347 kb on - strand at 3278.347 kb on - strand at 3278.347 kb on - strand at 3278.347 kb on - strand at 3278.347 kb on - strand at 3278.347 kb on - strand at 3278.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 3,275,881 + -0.2 3,275,882 - -0.5 3,275,889 + +0.7 3,275,889 + +0.5 3,275,889 + +1.7 3,275,889 + +1.8 3,275,889 + -0.2 3,275,889 + -1.4 3,275,889 + +0.8 3,275,914 + +5.4 3,275,914 + +3.4 3,275,914 + -1.9 3,276,098 + AO353_14790 0.25 -0.5 3,276,743 + +1.3 3,276,745 + +2.0 3,276,854 + AO353_14795 0.18 -0.5 3,277,000 - AO353_14795 0.38 -1.6 3,277,137 + AO353_14795 0.56 -1.5 3,277,137 + AO353_14795 0.56 -0.7 3,277,137 + AO353_14795 0.56 +1.8 3,277,138 - AO353_14795 0.56 -1.5 3,277,138 - AO353_14795 0.56 +1.1 3,277,138 - AO353_14795 0.56 -2.7 3,277,383 + AO353_14795 0.88 +1.1 3,277,383 + AO353_14795 0.88 -1.5 3,277,383 + AO353_14795 0.88 +0.5 3,277,383 + AO353_14795 0.88 -0.2 3,277,383 + AO353_14795 0.88 -0.7 3,277,383 + AO353_14795 0.88 -2.5 3,277,383 + AO353_14795 0.88 -1.2 3,277,383 + AO353_14795 0.88 +0.5 3,278,201 + -0.7 3,278,201 + -0.9 3,278,201 + -2.4 3,278,202 - -1.7 3,278,202 - +1.1 3,278,222 + -0.7 3,278,223 - -1.2 3,278,254 - -0.2 3,278,254 - -0.7 3,278,294 + -1.2 3,278,294 + -0.2 3,278,294 + -0.1 3,278,295 - -2.7 3,278,295 - -1.7 3,278,314 + +3.0 3,278,314 + -2.4 3,278,314 + -0.2 3,278,314 + -0.5 3,278,314 + +2.1 3,278,314 + -1.2 3,278,314 + +0.6 3,278,314 + -2.6 3,278,315 - +0.1 3,278,315 - +2.1 3,278,315 - -2.7 3,278,315 - +0.5 3,278,315 - -0.6 3,278,315 - +0.9 3,278,325 + +3.1 3,278,325 + +0.7 3,278,326 - +1.6 3,278,326 - -1.1 3,278,346 + -3.0 3,278,346 + -2.7 3,278,346 + -0.7 3,278,346 + -0.3 3,278,346 + -0.9 3,278,346 + +0.5 3,278,346 + -2.5 3,278,346 + -0.7 3,278,346 + -0.9 3,278,346 + -2.1 3,278,346 + +2.9 3,278,346 + -0.2 3,278,346 + -1.1 3,278,346 + -1.2 3,278,346 + -0.5 3,278,347 - +2.3 3,278,347 - -1.1 3,278,347 - +1.1 3,278,347 - -2.9 3,278,347 - -0.2 3,278,347 - -1.3 3,278,347 - -2.3
Or see this region's nucleotide sequence