Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08125

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08115 and AO353_08120 are separated by 240 nucleotidesAO353_08120 and AO353_08125 overlap by 1 nucleotidesAO353_08125 and AO353_08130 are separated by 95 nucleotidesAO353_08130 and AO353_08135 are separated by 26 nucleotides AO353_08115: AO353_08115 - energy transducer TonB, at 1,791,856 to 1,792,755 _08115 AO353_08120: AO353_08120 - hypothetical protein, at 1,792,996 to 1,793,565 _08120 AO353_08125: AO353_08125 - Holliday junction resolvase, at 1,793,565 to 1,794,002 _08125 AO353_08130: AO353_08130 - uracil phosphoribosyltransferase, at 1,794,098 to 1,794,604 _08130 AO353_08135: AO353_08135 - aspartate carbamoyltransferase catalytic subunit, at 1,794,631 to 1,795,635 _08135 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -2 -1 0 1 2at 1792.579 kb on + strand, within AO353_08115at 1792.580 kb on - strand, within AO353_08115at 1792.749 kb on + strandat 1792.749 kb on + strandat 1792.749 kb on + strandat 1792.749 kb on + strandat 1792.868 kb on - strandat 1792.868 kb on - strandat 1792.868 kb on - strandat 1793.017 kb on + strandat 1793.017 kb on + strandat 1793.017 kb on + strandat 1793.017 kb on + strandat 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.086 kb on + strand, within AO353_08120at 1793.281 kb on + strand, within AO353_08120at 1793.281 kb on + strand, within AO353_08120at 1793.281 kb on + strand, within AO353_08120at 1794.043 kb on + strandat 1794.043 kb on + strandat 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.243 kb on + strand, within AO353_08130at 1794.284 kb on + strand, within AO353_08130at 1794.284 kb on + strand, within AO353_08130

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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1,792,579 + AO353_08115 0.80 -0.1
1,792,580 - AO353_08115 0.80 -0.0
1,792,749 + +2.4
1,792,749 + -0.8
1,792,749 + +0.5
1,792,749 + -1.0
1,792,868 - -0.7
1,792,868 - -1.4
1,792,868 - +1.9
1,793,017 + +0.2
1,793,017 + -0.4
1,793,017 + +0.2
1,793,017 + -0.4
1,793,086 + AO353_08120 0.16 +0.2
1,793,086 + AO353_08120 0.16 -2.0
1,793,086 + AO353_08120 0.16 -0.1
1,793,086 + AO353_08120 0.16 +0.4
1,793,086 + AO353_08120 0.16 -1.4
1,793,086 + AO353_08120 0.16 +0.6
1,793,086 + AO353_08120 0.16 -0.0
1,793,086 + AO353_08120 0.16 -0.4
1,793,086 + AO353_08120 0.16 -1.1
1,793,281 + AO353_08120 0.50 -2.0
1,793,281 + AO353_08120 0.50 -0.4
1,793,281 + AO353_08120 0.50 -1.4
1,794,043 + -1.5
1,794,043 + -0.8
1,794,243 + AO353_08130 0.29 -0.4
1,794,243 + AO353_08130 0.29 -0.8
1,794,243 + AO353_08130 0.29 +1.2
1,794,243 + AO353_08130 0.29 -2.2
1,794,243 + AO353_08130 0.29 +0.6
1,794,284 + AO353_08130 0.37 -1.1
1,794,284 + AO353_08130 0.37 -0.1

Or see this region's nucleotide sequence