Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07995

Experiment: Doxycycline hyclate 0.0006 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0006 mg/ml
1,761,438	+		AO353_07985	0.57	-0.4
1,761,439	-		AO353_07985	0.57	-2.4
1,761,585	-		AO353_07985	0.70	+0.2
1,761,594	+		AO353_07985	0.70	+1.4
1,761,594	+		AO353_07985	0.70	+0.3
1,761,594	+		AO353_07985	0.70	-1.6
1,761,594	+		AO353_07985	0.70	-0.2
1,761,594	+		AO353_07985	0.70	-0.6
1,761,595	-		AO353_07985	0.70	-0.8
1,761,595	-		AO353_07985	0.70	-0.8
1,761,595	-		AO353_07985	0.70	-0.6
1,761,595	-		AO353_07985	0.70	-0.2
1,761,595	-		AO353_07985	0.70	+1.2
1,761,669	+		AO353_07985	0.77	-2.2
1,761,670	-		AO353_07985	0.77	-1.0
1,761,754	+		AO353_07985	0.84	-0.2
1,761,939	+				+0.8
1,761,939	+				+2.2
1,761,939	+				-0.2
1,761,939	+				-1.2
1,761,939	+				+2.2
1,761,940	-				+0.3
1,761,940	-				-1.6
1,761,940	-				-0.4
1,761,940	-				-1.5
1,761,940	-				-0.6
1,761,940	-				-1.9
1,761,953	+				-0.8
1,761,953	+				-1.9
1,761,953	+				-1.6
1,761,954	-				+1.3
1,761,954	-				-2.5
1,761,954	-				+2.2
1,761,993	+				+0.2
1,762,101	+		AO353_07990	0.22	-1.4
1,762,113	+		AO353_07990	0.25	-0.4
1,762,113	+		AO353_07990	0.25	+1.2
1,762,113	+		AO353_07990	0.25	+0.5
1,762,113	+		AO353_07990	0.25	+0.2
1,762,113	+		AO353_07990	0.25	-1.5
1,762,113	+		AO353_07990	0.25	+2.2
1,762,113	+		AO353_07990	0.25	+0.2
1,762,113	+		AO353_07990	0.25	-2.0
1,762,113	+		AO353_07990	0.25	-1.6
1,762,113	+		AO353_07990	0.25	-0.6
1,762,114	-		AO353_07990	0.26	+1.8
1,762,114	-		AO353_07990	0.26	-2.2
1,762,114	-		AO353_07990	0.26	+0.2
1,762,114	-		AO353_07990	0.26	+0.2
1,762,114	-		AO353_07990	0.26	-1.4
1,762,114	-		AO353_07990	0.26	+0.7
1,762,114	-		AO353_07990	0.26	-2.7
1,762,114	-		AO353_07990	0.26	-0.6
1,762,114	-		AO353_07990	0.26	+0.7
1,762,114	-		AO353_07990	0.26	+1.3
1,762,114	-		AO353_07990	0.26	-1.0
1,762,114	-		AO353_07990	0.26	-2.0
1,762,114	-		AO353_07990	0.26	+2.0
1,762,114	-		AO353_07990	0.26	-1.4
1,762,114	-		AO353_07990	0.26	-0.6
1,762,114	-		AO353_07990	0.26	+1.1
1,762,114	-		AO353_07990	0.26	+1.2
1,762,114	-		AO353_07990	0.26	+2.8
1,762,114	-		AO353_07990	0.26	+2.2
1,762,114	-		AO353_07990	0.26	+4.3
1,762,114	-		AO353_07990	0.26	-0.9
1,762,354	-		AO353_07990	0.88	-0.2
1,762,354	-		AO353_07990	0.88	-0.6
1,762,354	-		AO353_07990	0.88	-0.6
1,762,354	-		AO353_07990	0.88	+0.6
1,762,354	-		AO353_07990	0.88	-0.6
1,762,376	+				+0.6
1,762,376	+				+2.6
1,762,376	+				-1.5
1,762,376	+				-0.2
1,762,376	+				+0.2
1,762,377	-				+0.2
1,762,377	-				+2.6
1,762,377	-				-0.8
1,762,377	-				+1.2
1,762,377	-				-0.9
1,762,377	-				-1.0
1,762,377	-				-1.5
1,762,377	-				+0.8
1,762,414	+				-0.8
1,762,414	+				+1.3
1,762,415	-				-0.8
1,762,465	+				-0.7
1,762,466	-				-1.2
1,762,466	-				-3.5
1,762,514	+				-0.5
1,762,514	+				-0.8
1,762,613	+		AO353_07995	0.21	+0.4
1,762,614	-		AO353_07995	0.21	-1.7
1,762,614	-		AO353_07995	0.21	+0.8
1,762,677	+		AO353_07995	0.29	-0.6
1,762,677	+		AO353_07995	0.29	-2.1
1,762,677	+		AO353_07995	0.29	-0.9
1,762,677	+		AO353_07995	0.29	-1.2
1,762,677	+		AO353_07995	0.29	-1.3
1,762,677	+		AO353_07995	0.29	-0.9
1,762,678	-		AO353_07995	0.29	+0.1
1,762,678	-		AO353_07995	0.29	-1.2
1,762,678	-		AO353_07995	0.29	-0.4
1,762,678	-		AO353_07995	0.29	+1.1
1,762,678	-		AO353_07995	0.29	-0.4
1,762,678	-		AO353_07995	0.29	+0.6
1,762,678	-		AO353_07995	0.29	+1.1
1,762,678	-		AO353_07995	0.29	-0.6
1,762,678	-		AO353_07995	0.29	+1.1
1,762,678	-		AO353_07995	0.29	-0.4
1,762,678	-		AO353_07995	0.29	+1.2
1,762,678	-		AO353_07995	0.29	+0.1
1,762,678	-		AO353_07995	0.29	+0.1
1,762,752	-		AO353_07995	0.38	+1.6
1,763,103	+		AO353_07995	0.80	+0.1
1,763,103	+		AO353_07995	0.80	-0.4
1,763,103	+		AO353_07995	0.80	-0.7
1,763,104	-		AO353_07995	0.80	-0.4
1,763,214	+				-0.4
1,763,308	+				-0.3
1,763,308	+				-2.5
1,763,309	-				+3.0
1,763,309	-				-1.8
1,763,309	-				+2.0
1,763,309	-				-2.4
1,763,309	-				-0.1
1,763,309	-				-0.0
1,763,309	-				+0.9
1,763,324	+				-0.2
1,763,324	+				+1.6
1,763,324	+				-1.1
1,763,325	-				-1.6
1,763,325	-				+1.1
1,763,325	-				-0.4
1,763,325	-				-3.0
1,763,325	-				-3.2
1,763,325	-				-1.8
1,763,325	-				+3.8
1,763,325	-				-0.2
1,763,325	-				+1.9
1,763,325	-				+0.1
1,763,326	+				-1.9
1,763,327	-				-3.4
1,763,327	-				-1.3
1,763,327	-				+3.2
1,763,327	-				-1.9
1,763,327	-				-1.3
1,763,362	+				-1.0
1,763,362	+				-1.6
1,763,362	+				-2.7
1,763,362	+				+1.7
1,763,362	+				-2.0
1,763,362	+				-1.2
1,763,362	+				-0.8
1,763,362	+				+0.3
1,763,362	+				-1.7
1,763,362	+				+0.1
1,763,362	+				+0.3
1,763,362	+				-0.4
1,763,362	+				-0.4
1,763,362	+				+0.7
1,763,362	+				-0.4
1,763,362	+				-1.3
1,763,362	+				+0.9
1,763,363	-				+1.7
1,763,363	-				-1.2
1,763,363	-				-1.8
1,763,363	-				+0.1
1,763,363	-				+1.4
1,763,363	-				-1.2
1,763,363	-				-1.9
1,763,363	-				-0.2
1,763,363	-				+2.1
1,763,363	-				-1.2
1,763,363	-				+1.3
1,763,363	-				-1.3
1,763,363	-				+1.5
1,763,363	-				-1.4
1,763,366	+				+0.3
1,763,366	+				+0.1
1,763,366	+				-0.2
1,763,366	+				+0.6
1,763,366	+				+0.3
1,763,366	+				+0.6
1,763,366	+				+1.1
1,763,366	+				+1.7
1,763,366	+				+0.3
1,763,366	+				+1.8
1,763,366	+				+2.6
1,763,367	-				+2.0
1,763,367	-				+1.1
1,763,367	-				+2.0
1,763,367	-				+1.4
1,763,367	-				-0.5
1,763,367	-				+0.2
1,763,367	-				+0.1
1,763,367	-				+0.6
1,763,367	-				-0.2
1,763,367	-				-1.7
1,763,367	-				-0.4
1,763,423	+				+1.1
1,763,423	+				-0.7
1,763,423	+				-0.7
1,763,423	+				+0.6
1,763,423	+				-0.2
1,763,423	+				-1.7
1,763,423	+				-0.4
1,763,423	+				+0.1
1,763,424	-				+0.3
1,763,424	-				-1.6
1,763,424	-				-0.9
1,763,424	-				-0.7
1,763,424	-				-0.7
1,763,424	-				-1.6
1,763,424	-				+3.8
1,763,424	-				-0.0
1,763,424	-				-2.5
1,763,424	-				-0.0
1,763,737	+		AO353_08000	0.23	+0.3
1,763,738	-		AO353_08000	0.23	+1.0
1,763,738	-		AO353_08000	0.23	-2.8
1,763,738	-		AO353_08000	0.23	-2.2
1,763,738	-		AO353_08000	0.23	-1.4
1,763,766	+		AO353_08000	0.26	-0.6
1,763,766	+		AO353_08000	0.26	-1.2
1,763,767	-		AO353_08000	0.26	+1.7
1,763,767	-		AO353_08000	0.26	-1.5
1,763,822	+		AO353_08000	0.30	+1.4
1,763,822	+		AO353_08000	0.30	+0.2
1,763,888	+		AO353_08000	0.36	-1.7
1,763,889	-		AO353_08000	0.36	+0.6
1,763,889	-		AO353_08000	0.36	+1.4
1,763,889	-		AO353_08000	0.36	-1.7
1,763,889	-		AO353_08000	0.36	-2.5
1,763,923	+		AO353_08000	0.39	+0.2
1,763,923	+		AO353_08000	0.39	+0.8
1,764,050	+		AO353_08000	0.50	+2.4
1,764,050	+		AO353_08000	0.50	+0.6
1,764,050	+		AO353_08000	0.50	-1.7
1,764,050	+		AO353_08000	0.50	-1.7
1,764,051	-		AO353_08000	0.50	-0.8
1,764,051	-		AO353_08000	0.50	-1.5
1,764,127	+		AO353_08000	0.56	-0.6
1,764,127	+		AO353_08000	0.56	-0.6
1,764,127	+		AO353_08000	0.56	-1.1
1,764,128	-		AO353_08000	0.56	-0.2
1,764,128	-		AO353_08000	0.56	-0.6
1,764,128	-		AO353_08000	0.56	+1.8
1,764,128	-		AO353_08000	0.56	+0.6
1,764,128	-		AO353_08000	0.56	-1.2
1,764,266	+		AO353_08000	0.68	-1.0