Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05405

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05395 and AO353_05400 are separated by 10 nucleotidesAO353_05400 and AO353_05405 are separated by 10 nucleotidesAO353_05405 and AO353_05410 overlap by 1 nucleotides AO353_05395: AO353_05395 - peptide ABC transporter permease, at 1,189,568 to 1,190,578 _05395 AO353_05400: AO353_05400 - peptide transporter, at 1,190,589 to 1,191,500 _05400 AO353_05405: AO353_05405 - peptide ABC transporter ATP-binding protein, at 1,191,511 to 1,192,479 _05405 AO353_05410: AO353_05410 - peptide ABC transporter ATP-binding protein, at 1,192,479 to 1,193,450 _05410 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1190.527 kb on - strandat 1190.533 kb on + strandat 1190.534 kb on - strandat 1190.540 kb on + strandat 1190.541 kb on - strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.585 kb on - strandat 1190.585 kb on - strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.594 kb on + strandat 1190.594 kb on + strandat 1190.594 kb on + strandat 1190.595 kb on - strandat 1190.595 kb on - strandat 1190.603 kb on + strandat 1190.646 kb on + strandat 1190.646 kb on + strandat 1190.646 kb on + strandat 1190.647 kb on - strandat 1190.647 kb on - strandat 1191.117 kb on + strand, within AO353_05400at 1191.117 kb on + strand, within AO353_05400at 1191.117 kb on + strand, within AO353_05400at 1191.117 kb on + strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.165 kb on + strand, within AO353_05400at 1191.165 kb on + strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.322 kb on + strand, within AO353_05400at 1191.322 kb on + strand, within AO353_05400at 1191.322 kb on + strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.373 kb on - strand, within AO353_05400at 1191.373 kb on - strand, within AO353_05400at 1191.824 kb on - strand, within AO353_05405at 1191.824 kb on - strand, within AO353_05405at 1191.851 kb on + strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.179 kb on - strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.205 kb on + strand, within AO353_05405at 1192.206 kb on - strand, within AO353_05405at 1192.206 kb on - strand, within AO353_05405at 1192.252 kb on + strand, within AO353_05405at 1192.252 kb on + strand, within AO353_05405at 1192.276 kb on - strand, within AO353_05405at 1192.381 kb on + strand, within AO353_05405at 1192.381 kb on + strand, within AO353_05405at 1192.382 kb on - strand, within AO353_05405at 1192.382 kb on - strand, within AO353_05405at 1192.453 kb on + strandat 1192.453 kb on + strandat 1192.453 kb on + strandat 1192.453 kb on + strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.477 kb on + strandat 1192.477 kb on + strandat 1192.518 kb on + strandat 1192.518 kb on + strandat 1192.736 kb on + strand, within AO353_05410at 1192.736 kb on + strand, within AO353_05410at 1192.737 kb on - strand, within AO353_05410at 1192.779 kb on + strand, within AO353_05410at 1192.832 kb on - strand, within AO353_05410at 1192.832 kb on - strand, within AO353_05410at 1192.917 kb on + strand, within AO353_05410at 1192.917 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strandat 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.102 kb on - strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.223 kb on + strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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1,190,527 - +2.5
1,190,533 + +0.9
1,190,534 - +1.2
1,190,540 + -0.6
1,190,541 - +2.4
1,190,584 + -1.1
1,190,584 + -1.8
1,190,584 + -0.6
1,190,584 + -0.3
1,190,584 + -1.1
1,190,584 + -0.1
1,190,585 - -1.3
1,190,585 - -0.3
1,190,588 + +0.0
1,190,588 + -0.8
1,190,588 + +0.8
1,190,588 + -0.3
1,190,588 + +0.4
1,190,588 + -0.8
1,190,588 + -1.0
1,190,588 + -2.0
1,190,588 + +2.7
1,190,588 + +1.0
1,190,588 + +0.4
1,190,588 + +0.2
1,190,588 + +0.9
1,190,588 + +0.4
1,190,588 + -1.6
1,190,588 + +0.0
1,190,588 + -1.0
1,190,588 + +1.3
1,190,588 + -0.3
1,190,588 + -1.1
1,190,588 + +1.6
1,190,588 + -1.1
1,190,589 - -0.1
1,190,589 - -1.0
1,190,589 - -0.8
1,190,589 - +2.6
1,190,589 - +0.7
1,190,589 - +0.0
1,190,589 - +2.0
1,190,589 - -0.8
1,190,589 - +0.4
1,190,589 - -1.1
1,190,589 - -0.8
1,190,589 - -1.0
1,190,589 - -1.0
1,190,589 - +0.4
1,190,589 - -0.3
1,190,589 - -1.8
1,190,589 - -0.6
1,190,589 - +0.4
1,190,589 - -1.4
1,190,589 - +0.4
1,190,594 + -0.3
1,190,594 + +1.5
1,190,594 + -0.3
1,190,595 - -0.8
1,190,595 - +0.0
1,190,603 + +0.0
1,190,646 + +1.0
1,190,646 + -0.1
1,190,646 + -1.7
1,190,647 - -1.6
1,190,647 - -1.4
1,191,117 + AO353_05400 0.58 +2.5
1,191,117 + AO353_05400 0.58 +1.0
1,191,117 + AO353_05400 0.58 -2.1
1,191,117 + AO353_05400 0.58 +0.0
1,191,118 - AO353_05400 0.58 -1.4
1,191,118 - AO353_05400 0.58 -2.1
1,191,118 - AO353_05400 0.58 -1.0
1,191,118 - AO353_05400 0.58 -0.9
1,191,118 - AO353_05400 0.58 +0.4
1,191,118 - AO353_05400 0.58 +0.4
1,191,165 + AO353_05400 0.63 +1.1
1,191,165 + AO353_05400 0.63 +3.2
1,191,166 - AO353_05400 0.63 -1.2
1,191,166 - AO353_05400 0.63 +1.9
1,191,166 - AO353_05400 0.63 +2.1
1,191,166 - AO353_05400 0.63 +2.0
1,191,166 - AO353_05400 0.63 +3.0
1,191,166 - AO353_05400 0.63 +2.6
1,191,166 - AO353_05400 0.63 -1.4
1,191,322 + AO353_05400 0.80 -0.9
1,191,322 + AO353_05400 0.80 -1.8
1,191,322 + AO353_05400 0.80 +1.8
1,191,323 - AO353_05400 0.80 -0.8
1,191,323 - AO353_05400 0.80 -1.0
1,191,323 - AO353_05400 0.80 -0.3
1,191,323 - AO353_05400 0.80 +1.4
1,191,323 - AO353_05400 0.80 -1.1
1,191,373 - AO353_05400 0.86 -0.8
1,191,373 - AO353_05400 0.86 -2.0
1,191,824 - AO353_05405 0.32 -0.8
1,191,824 - AO353_05405 0.32 +1.3
1,191,851 + AO353_05405 0.35 +1.0
1,191,852 - AO353_05405 0.35 -2.0
1,191,852 - AO353_05405 0.35 -1.1
1,191,852 - AO353_05405 0.35 +1.0
1,191,852 - AO353_05405 0.35 -1.0
1,191,852 - AO353_05405 0.35 +2.0
1,192,178 + AO353_05405 0.69 -0.3
1,192,178 + AO353_05405 0.69 +1.9
1,192,178 + AO353_05405 0.69 -0.3
1,192,178 + AO353_05405 0.69 -3.6
1,192,179 - AO353_05405 0.69 -1.4
1,192,189 + AO353_05405 0.70 -0.3
1,192,189 + AO353_05405 0.70 +1.3
1,192,189 + AO353_05405 0.70 -0.3
1,192,189 + AO353_05405 0.70 -2.7
1,192,189 + AO353_05405 0.70 -1.3
1,192,189 + AO353_05405 0.70 +0.0
1,192,190 - AO353_05405 0.70 -0.7
1,192,190 - AO353_05405 0.70 +0.6
1,192,190 - AO353_05405 0.70 +2.0
1,192,190 - AO353_05405 0.70 -1.9
1,192,190 - AO353_05405 0.70 -1.6
1,192,190 - AO353_05405 0.70 +1.6
1,192,190 - AO353_05405 0.70 +1.6
1,192,205 + AO353_05405 0.72 -2.2
1,192,206 - AO353_05405 0.72 -1.3
1,192,206 - AO353_05405 0.72 -1.1
1,192,252 + AO353_05405 0.76 -0.3
1,192,252 + AO353_05405 0.76 -0.3
1,192,276 - AO353_05405 0.79 -2.0
1,192,381 + AO353_05405 0.90 +0.2
1,192,381 + AO353_05405 0.90 +0.1
1,192,382 - AO353_05405 0.90 +1.4
1,192,382 - AO353_05405 0.90 +1.1
1,192,453 + -0.1
1,192,453 + +0.0
1,192,453 + -1.0
1,192,453 + -1.1
1,192,454 - -2.4
1,192,454 - +0.0
1,192,454 - +3.2
1,192,454 - +1.8
1,192,454 - -0.6
1,192,477 + -1.1
1,192,477 + -1.3
1,192,518 + +0.0
1,192,518 + +2.2
1,192,736 + AO353_05410 0.26 -0.4
1,192,736 + AO353_05410 0.26 -0.7
1,192,737 - AO353_05410 0.27 +0.4
1,192,779 + AO353_05410 0.31 +3.1
1,192,832 - AO353_05410 0.36 +1.4
1,192,832 - AO353_05410 0.36 +2.0
1,192,917 + AO353_05410 0.45 +1.6
1,192,917 + AO353_05410 0.45 +3.2
1,193,097 + AO353_05410 0.64 +0.1
1,193,097 + AO353_05410 0.64 +0.4
1,193,097 + AO353_05410 0.64 +0.4
1,193,097 + AO353_05410 0.64 +0.4
1,193,097 + AO353_05410 0.64 +1.8
1,193,098 - AO353_05410 0.64 +0.9
1,193,098 - AO353_05410 0.64 +0.0
1,193,098 - AO353_05410 0.64 -0.3
1,193,101 + AO353_05410 0.64 +0.0
1,193,101 + AO353_05410 0.64 +1.3
1,193,101 + AO353_05410 0.64 +3.4
1,193,101 + AO353_05410 0.64 -1.8
1,193,101 + AO353_05410 0.64 +0.4
1,193,101 + AO353_05410 0.64 +1.0
1,193,101 + AO353_05410 0.64 -1.8
1,193,101 + AO353_05410 0.64 +0.8
1,193,101 + AO353_05410 0.64 +0.7
1,193,101 + AO353_05410 0.64 +1.3
1,193,101 + AO353_05410 0.64 +0.0
1,193,101 + AO353_05410 0.64 +3.6
1,193,101 + AO353_05410 0.64 +0.9
1,193,101 + AO353_05410 0.64 +1.4
1,193,101 + +0.4
1,193,101 + AO353_05410 0.64 +0.3
1,193,101 + AO353_05410 0.64 +1.0
1,193,101 + AO353_05410 0.64 +1.7
1,193,101 + AO353_05410 0.64 -0.1
1,193,101 + AO353_05410 0.64 -0.9
1,193,101 + AO353_05410 0.64 +1.8
1,193,101 + AO353_05410 0.64 +1.7
1,193,101 + AO353_05410 0.64 +2.4
1,193,101 + AO353_05410 0.64 +2.3
1,193,101 + AO353_05410 0.64 +2.2
1,193,101 + AO353_05410 0.64 -0.6
1,193,101 + AO353_05410 0.64 +1.6
1,193,101 + AO353_05410 0.64 -0.2
1,193,101 + AO353_05410 0.64 +1.8
1,193,101 + AO353_05410 0.64 +1.3
1,193,101 + AO353_05410 0.64 +0.4
1,193,101 + AO353_05410 0.64 +0.8
1,193,101 + AO353_05410 0.64 +0.7
1,193,101 + AO353_05410 0.64 -0.8
1,193,102 - AO353_05410 0.64 -3.1
1,193,160 + AO353_05410 0.70 +1.8
1,193,160 + AO353_05410 0.70 -1.3
1,193,160 + AO353_05410 0.70 -2.3
1,193,161 - AO353_05410 0.70 +1.7
1,193,161 - AO353_05410 0.70 +0.3
1,193,161 - AO353_05410 0.70 -1.0
1,193,161 - AO353_05410 0.70 -2.8
1,193,161 - AO353_05410 0.70 -0.3
1,193,161 - AO353_05410 0.70 -0.4
1,193,202 + AO353_05410 0.74 +0.8
1,193,202 + AO353_05410 0.74 -0.3
1,193,202 + AO353_05410 0.74 -1.0
1,193,202 + AO353_05410 0.74 +2.3
1,193,202 + AO353_05410 0.74 -2.6
1,193,202 + AO353_05410 0.74 -1.0
1,193,202 + AO353_05410 0.74 -1.1
1,193,202 + AO353_05410 0.74 -2.6
1,193,202 + AO353_05410 0.74 -0.3
1,193,202 + AO353_05410 0.74 +3.7
1,193,202 + AO353_05410 0.74 +3.5
1,193,202 + AO353_05410 0.74 -1.1
1,193,202 + AO353_05410 0.74 +0.0
1,193,202 + AO353_05410 0.74 -0.4
1,193,203 - AO353_05410 0.74 +0.0
1,193,203 - AO353_05410 0.74 -0.6
1,193,203 - AO353_05410 0.74 -2.4
1,193,203 - AO353_05410 0.74 -0.8
1,193,203 - AO353_05410 0.74 +0.9
1,193,203 - AO353_05410 0.74 +2.2
1,193,203 - AO353_05410 0.74 +1.6
1,193,203 - AO353_05410 0.74 +0.2
1,193,203 - AO353_05410 0.74 -0.8
1,193,203 - AO353_05410 0.74 +1.9
1,193,203 - AO353_05410 0.74 +0.0
1,193,203 - AO353_05410 0.74 -1.0
1,193,203 - AO353_05410 0.74 -1.6
1,193,203 - AO353_05410 0.74 -1.8
1,193,223 + AO353_05410 0.77 +0.4
1,193,224 - AO353_05410 0.77 +1.6
1,193,224 - AO353_05410 0.77 +0.8
1,193,224 - AO353_05410 0.77 +1.6
1,193,448 + -2.4

Or see this region's nucleotide sequence