Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04230

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04225 and AO353_04230 overlap by 4 nucleotidesAO353_04230 and AO353_04235 overlap by 4 nucleotides AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289 _04225 AO353_04230: AO353_04230 - chemotaxis protein CheW, at 909,286 to 909,969 _04230 AO353_04235: AO353_04235 - chemotaxis protein CheR, at 909,966 to 911,243 _04235 Position (kb) 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.650 kb on - strand, within AO353_04225at 908.767 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.798 kb on - strand, within AO353_04230at 909.830 kb on + strand, within AO353_04230at 909.975 kb on - strandat 909.975 kb on - strandat 909.975 kb on - strandat 910.001 kb on + strandat 910.001 kb on + strandat 910.002 kb on - strandat 910.060 kb on - strandat 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.178 kb on - strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.248 kb on - strand, within AO353_04235at 910.418 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.642 kb on + strand, within AO353_04235at 910.642 kb on + strand, within AO353_04235at 910.643 kb on - strand, within AO353_04235at 910.753 kb on + strand, within AO353_04235at 910.754 kb on - strand, within AO353_04235at 910.754 kb on - strand, within AO353_04235at 910.802 kb on - strand, within AO353_04235at 910.910 kb on - strand, within AO353_04235at 910.910 kb on - strand, within AO353_04235at 910.962 kb on - strand, within AO353_04235

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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908,344 + AO353_04225 0.59 -2.1
908,344 + AO353_04225 0.59 +0.3
908,344 + AO353_04225 0.59 -0.9
908,344 + AO353_04225 0.59 -0.3
908,344 + AO353_04225 0.59 -0.4
908,344 + AO353_04225 0.59 +0.3
908,345 - AO353_04225 0.59 -0.7
908,345 - AO353_04225 0.59 -1.1
908,345 - AO353_04225 0.59 +1.6
908,345 - AO353_04225 0.59 -1.4
908,345 - AO353_04225 0.59 -0.3
908,345 - AO353_04225 0.59 -1.4
908,345 - AO353_04225 0.59 +1.5
908,427 + AO353_04225 0.62 +1.2
908,427 + AO353_04225 0.62 +0.7
908,427 + AO353_04225 0.62 -1.9
908,427 + AO353_04225 0.62 -1.6
908,427 + AO353_04225 0.62 -0.7
908,427 + AO353_04225 0.62 +1.5
908,428 - AO353_04225 0.62 +1.0
908,428 - AO353_04225 0.62 -0.4
908,428 - AO353_04225 0.62 +0.6
908,649 + AO353_04225 0.72 +0.3
908,649 + AO353_04225 0.72 -1.4
908,649 + AO353_04225 0.72 +0.9
908,650 - AO353_04225 0.72 +0.3
908,767 + AO353_04225 0.77 +0.3
908,931 + AO353_04225 0.84 +0.3
908,931 + AO353_04225 0.84 -1.1
908,931 + AO353_04225 0.84 -2.4
908,931 + AO353_04225 0.84 +1.0
908,932 - AO353_04225 0.84 -2.4
908,932 - AO353_04225 0.84 -2.0
908,932 - AO353_04225 0.84 +1.0
908,932 - AO353_04225 0.84 +2.3
909,377 + AO353_04230 0.13 -1.1
909,377 + AO353_04230 0.13 +0.9
909,377 + AO353_04230 0.13 +0.3
909,378 - AO353_04230 0.13 -0.4
909,378 - AO353_04230 0.13 -0.7
909,378 - AO353_04230 0.13 -0.3
909,378 - AO353_04230 0.13 -1.8
909,378 - AO353_04230 0.13 -0.4
909,378 - AO353_04230 0.13 +0.1
909,378 - AO353_04230 0.13 -1.1
909,798 - AO353_04230 0.75 -0.1
909,830 + AO353_04230 0.80 -1.4
909,975 - -0.4
909,975 - +0.9
909,975 - -1.8
910,001 + -0.9
910,001 + -1.3
910,002 - +2.6
910,060 - -0.1
910,105 + AO353_04235 0.11 -0.7
910,105 + AO353_04235 0.11 -1.8
910,105 + AO353_04235 0.11 +1.1
910,105 + AO353_04235 0.11 +0.9
910,106 - AO353_04235 0.11 +1.7
910,106 - AO353_04235 0.11 -1.1
910,106 - AO353_04235 0.11 -1.6
910,106 - AO353_04235 0.11 +1.2
910,177 + AO353_04235 0.17 +2.8
910,177 + AO353_04235 0.17 +2.3
910,178 - AO353_04235 0.17 -1.1
910,213 + AO353_04235 0.19 +0.3
910,213 + AO353_04235 0.19 -1.1
910,213 + AO353_04235 0.19 +3.2
910,213 + AO353_04235 0.19 -0.1
910,213 + AO353_04235 0.19 -0.7
910,214 - AO353_04235 0.19 +1.9
910,214 - AO353_04235 0.19 +0.3
910,214 - AO353_04235 0.19 +2.3
910,247 + AO353_04235 0.22 +3.2
910,247 + AO353_04235 0.22 +0.3
910,247 + AO353_04235 0.22 -0.4
910,247 + AO353_04235 0.22 +2.4
910,247 + AO353_04235 0.22 -0.1
910,248 - AO353_04235 0.22 -2.9
910,418 + AO353_04235 0.35 +2.1
910,551 + AO353_04235 0.46 +1.4
910,551 + AO353_04235 0.46 +3.2
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 +1.7
910,551 + AO353_04235 0.46 +1.8
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 -2.2
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 -0.2
910,551 + AO353_04235 0.46 +2.1
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 -0.7
910,551 + AO353_04235 0.46 -1.1
910,551 + AO353_04235 0.46 -0.7
910,551 + AO353_04235 0.46 -0.1
910,551 + AO353_04235 0.46 -1.3
910,552 - AO353_04235 0.46 +2.5
910,552 - AO353_04235 0.46 -0.9
910,552 - AO353_04235 0.46 +0.9
910,552 - AO353_04235 0.46 +2.3
910,553 + AO353_04235 0.46 -0.7
910,553 + AO353_04235 0.46 -2.5
910,553 + AO353_04235 0.46 +2.4
910,553 + AO353_04235 0.46 +2.5
910,554 - AO353_04235 0.46 -1.6
910,554 - AO353_04235 0.46 -0.9
910,554 - AO353_04235 0.46 -0.1
910,554 - AO353_04235 0.46 -0.7
910,554 - AO353_04235 0.46 +0.3
910,554 - AO353_04235 0.46 -2.1
910,554 - AO353_04235 0.46 +1.3
910,554 - AO353_04235 0.46 +0.9
910,554 - AO353_04235 0.46 -0.4
910,609 + AO353_04235 0.50 -1.4
910,609 + AO353_04235 0.50 +1.9
910,609 + AO353_04235 0.50 +0.7
910,610 - AO353_04235 0.50 +2.2
910,610 - AO353_04235 0.50 -2.1
910,610 - AO353_04235 0.50 -2.3
910,642 + AO353_04235 0.53 -0.4
910,642 + AO353_04235 0.53 -0.7
910,643 - AO353_04235 0.53 -1.7
910,753 + AO353_04235 0.62 -2.4
910,754 - AO353_04235 0.62 -1.3
910,754 - AO353_04235 0.62 -2.4
910,802 - AO353_04235 0.65 -2.2
910,910 - AO353_04235 0.74 +1.9
910,910 - AO353_04235 0.74 +1.8
910,962 - AO353_04235 0.78 +0.3

Or see this region's nucleotide sequence