Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04215 and AO353_04220 are separated by 42 nucleotides AO353_04220 and AO353_04225 overlap by 4 nucleotides
AO353_04215: AO353_04215 - diguanylate cyclase, at 904,944 to 905,945
_04215
AO353_04220: AO353_04220 - chemotaxis protein CheY, at 905,988 to 906,998
_04220
AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289
_04225
Position (kb) 905
906
907 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 905.024 kb on - strand at 905.095 kb on - strand, within AO353_04215 at 905.171 kb on + strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.414 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.599 kb on + strand, within AO353_04215 at 905.919 kb on - strand at 905.919 kb on - strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.935 kb on - strand at 905.935 kb on - strand at 905.962 kb on - strand at 905.970 kb on + strand at 905.971 kb on - strand at 905.971 kb on - strand at 905.971 kb on - strand at 905.971 kb on - strand at 906.045 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.086 kb on - strand at 906.086 kb on - strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.281 kb on - strand, within AO353_04220 at 906.290 kb on + strand, within AO353_04220 at 906.303 kb on + strand, within AO353_04220 at 907.013 kb on + strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.067 kb on + strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.074 kb on + strand at 907.074 kb on + strand at 907.074 kb on + strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.126 kb on - strand at 907.126 kb on - strand at 907.126 kb on - strand at 907.210 kb on + strand at 907.211 kb on - strand at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.364 kb on - strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.634 kb on - strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.801 kb on - strand, within AO353_04225 at 907.801 kb on - strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 904,988 - +4.2 904,988 - +0.3 904,988 - +1.9 904,988 - +1.1 905,024 - +1.4 905,095 - AO353_04215 0.15 +1.9 905,171 + AO353_04215 0.23 -0.9 905,172 - AO353_04215 0.23 +3.1 905,172 - AO353_04215 0.23 -1.4 905,172 - AO353_04215 0.23 +0.8 905,308 + AO353_04215 0.36 -0.5 905,308 + AO353_04215 0.36 -1.1 905,308 + AO353_04215 0.36 -0.7 905,308 + AO353_04215 0.36 -2.4 905,308 + AO353_04215 0.36 +3.5 905,309 - AO353_04215 0.36 -0.4 905,309 - AO353_04215 0.36 -2.6 905,309 - AO353_04215 0.36 -2.7 905,309 - AO353_04215 0.36 -1.6 905,309 - AO353_04215 0.36 -2.4 905,320 + AO353_04215 0.38 -1.7 905,320 + AO353_04215 0.38 -1.1 905,321 - AO353_04215 0.38 +2.1 905,321 - AO353_04215 0.38 +2.1 905,392 + AO353_04215 0.45 -1.4 905,392 + AO353_04215 0.45 -0.7 905,392 + AO353_04215 0.45 +1.4 905,393 - AO353_04215 0.45 +0.3 905,393 - AO353_04215 0.45 +0.9 905,393 - AO353_04215 0.45 -0.1 905,393 - AO353_04215 0.45 -1.3 905,393 - AO353_04215 0.45 -0.4 905,414 + AO353_04215 0.47 +1.2 905,536 + AO353_04215 0.59 +1.9 905,536 + AO353_04215 0.59 -0.7 905,536 + AO353_04215 0.59 +1.9 905,536 + AO353_04215 0.59 +0.9 905,536 + AO353_04215 0.59 -2.5 905,536 + AO353_04215 0.59 +1.3 905,536 + AO353_04215 0.59 -0.1 905,536 + AO353_04215 0.59 -1.1 905,536 + AO353_04215 0.59 +1.9 905,536 + AO353_04215 0.59 +0.9 905,536 + AO353_04215 0.59 -1.1 905,536 + AO353_04215 0.59 +2.6 905,537 - AO353_04215 0.59 +1.9 905,537 - AO353_04215 0.59 -1.6 905,537 - AO353_04215 0.59 -0.1 905,537 - AO353_04215 0.59 -2.4 905,537 - AO353_04215 0.59 +3.5 905,537 - AO353_04215 0.59 -1.1 905,537 - AO353_04215 0.59 -0.9 905,537 - AO353_04215 0.59 +0.3 905,599 + AO353_04215 0.65 -2.0 905,919 - +1.0 905,919 - +1.2 905,934 + +0.7 905,934 + +0.8 905,934 + -1.1 905,934 + -1.4 905,935 - +2.2 905,935 - +1.6 905,962 - -2.0 905,970 + -1.3 905,971 - +2.9 905,971 - +2.2 905,971 - +2.0 905,971 - +1.9 906,045 + -0.7 906,085 + -0.9 906,085 + +2.6 906,085 + +2.5 906,085 + -0.7 906,086 - +0.3 906,086 - +0.3 906,087 + +1.9 906,087 + -1.1 906,087 + +0.3 906,087 + -0.9 906,087 + +1.9 906,088 - +0.3 906,088 - +1.9 906,088 - +2.2 906,088 - +1.9 906,088 - +3.2 906,088 - -1.4 906,088 - +0.3 906,124 + AO353_04220 0.13 +1.7 906,124 + AO353_04220 0.13 +0.1 906,124 + AO353_04220 0.13 -0.4 906,124 + AO353_04220 0.13 +1.2 906,124 + AO353_04220 0.13 +2.6 906,125 - AO353_04220 0.14 +0.0 906,125 - AO353_04220 0.14 +1.9 906,125 - AO353_04220 0.14 +1.2 906,125 - AO353_04220 0.14 +0.9 906,146 + AO353_04220 0.16 +3.5 906,146 + AO353_04220 0.16 -1.8 906,146 + AO353_04220 0.16 -1.3 906,147 - AO353_04220 0.16 +2.6 906,147 - AO353_04220 0.16 +2.3 906,147 - AO353_04220 0.16 -1.1 906,211 + AO353_04220 0.22 -0.9 906,211 + AO353_04220 0.22 -1.6 906,211 + AO353_04220 0.22 -1.8 906,212 - AO353_04220 0.22 -1.9 906,212 - AO353_04220 0.22 +0.1 906,212 - AO353_04220 0.22 -0.7 906,212 - AO353_04220 0.22 -1.3 906,212 - AO353_04220 0.22 -2.3 906,254 - AO353_04220 0.26 +3.1 906,254 - AO353_04220 0.26 +1.3 906,254 - AO353_04220 0.26 -2.2 906,254 - AO353_04220 0.26 +2.0 906,254 - AO353_04220 0.26 -0.4 906,281 - AO353_04220 0.29 -0.4 906,290 + AO353_04220 0.30 +5.1 906,303 + AO353_04220 0.31 -1.9 907,013 + -1.4 907,014 - -1.3 907,014 - +3.3 907,014 - +0.9 907,014 - +0.3 907,014 - -0.4 907,067 + +2.2 907,068 - -2.0 907,068 - -1.8 907,068 - +0.3 907,068 - -0.9 907,071 + +2.6 907,071 + +0.1 907,071 + +1.6 907,071 + +0.9 907,071 + -0.1 907,071 + -0.4 907,071 + -1.8 907,072 - +1.8 907,072 - +1.9 907,072 - -0.4 907,072 - -0.1 907,072 - -1.4 907,072 - -0.4 907,072 - -0.9 907,072 - +2.0 907,072 - +0.8 907,074 + -0.1 907,074 + -0.7 907,074 + -1.7 907,075 - -0.9 907,075 - -0.4 907,075 - -0.4 907,075 - -0.6 907,125 + +1.9 907,125 + +0.7 907,125 + -0.4 907,125 + -2.4 907,126 - -1.7 907,126 - -1.4 907,126 - +1.6 907,210 + +0.3 907,211 - +0.9 907,363 + AO353_04225 0.16 -1.4 907,363 + AO353_04225 0.16 +2.1 907,363 + AO353_04225 0.16 +2.0 907,363 + AO353_04225 0.16 +1.8 907,363 + AO353_04225 0.16 -0.4 907,363 + AO353_04225 0.16 -1.6 907,364 - AO353_04225 0.16 +2.5 907,599 + AO353_04225 0.26 +0.9 907,599 + AO353_04225 0.26 +0.9 907,599 + AO353_04225 0.26 -1.3 907,599 + AO353_04225 0.26 +0.6 907,600 - AO353_04225 0.26 -0.4 907,600 - AO353_04225 0.26 +0.9 907,600 - AO353_04225 0.26 +0.6 907,634 - AO353_04225 0.28 +0.4 907,800 + AO353_04225 0.35 +3.5 907,800 + AO353_04225 0.35 +2.3 907,800 + AO353_04225 0.35 +0.3 907,800 + AO353_04225 0.35 +2.9 907,801 - AO353_04225 0.35 +1.9 907,801 - AO353_04225 0.35 -1.4 907,952 + AO353_04225 0.42 -0.1 907,952 + AO353_04225 0.42 +0.7 907,952 + AO353_04225 0.42 -1.5
Or see this region's nucleotide sequence