Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03690 and AO353_03695 are separated by 4 nucleotides AO353_03695 and AO353_03700 overlap by 4 nucleotides
AO353_03690: AO353_03690 - glycoside hydrolase, at 789,692 to 790,801
_03690
AO353_03695: AO353_03695 - deacetylase, at 790,806 to 791,570
_03695
AO353_03700: AO353_03700 - hypothetical protein, at 791,567 to 792,562
_03700
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 789.845 kb on + strand, within AO353_03690 at 789.845 kb on + strand, within AO353_03690 at 789.846 kb on - strand, within AO353_03690 at 789.846 kb on - strand, within AO353_03690 at 789.917 kb on - strand, within AO353_03690 at 789.917 kb on - strand, within AO353_03690 at 789.917 kb on - strand, within AO353_03690 at 789.948 kb on + strand, within AO353_03690 at 789.948 kb on + strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.965 kb on + strand, within AO353_03690 at 789.966 kb on - strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.029 kb on - strand, within AO353_03690 at 790.029 kb on - strand, within AO353_03690 at 790.029 kb on - strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.112 kb on + strand, within AO353_03690 at 790.113 kb on - strand, within AO353_03690 at 790.293 kb on + strand, within AO353_03690 at 790.294 kb on - strand, within AO353_03690 at 790.608 kb on + strand, within AO353_03690 at 790.608 kb on + strand, within AO353_03690 at 790.608 kb on + strand, within AO353_03690 at 790.609 kb on - strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.689 kb on - strand, within AO353_03690 at 790.715 kb on + strand at 790.715 kb on + strand at 790.715 kb on + strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.754 kb on + strand at 790.755 kb on - strand at 790.757 kb on + strand at 790.757 kb on + strand at 790.758 kb on - strand at 790.758 kb on - strand at 790.758 kb on - strand at 790.866 kb on + strand at 791.028 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.112 kb on + strand, within AO353_03695 at 791.112 kb on + strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.262 kb on + strand, within AO353_03695 at 791.262 kb on + strand, within AO353_03695 at 791.262 kb on + strand, within AO353_03695 at 791.263 kb on - strand, within AO353_03695 at 791.263 kb on - strand, within AO353_03695 at 791.263 kb on - strand, within AO353_03695 at 791.428 kb on + strand, within AO353_03695 at 791.429 kb on - strand, within AO353_03695 at 791.429 kb on - strand, within AO353_03695 at 791.466 kb on + strand, within AO353_03695 at 791.466 kb on + strand, within AO353_03695 at 791.558 kb on + strand at 791.559 kb on - strand at 791.622 kb on + strand at 791.623 kb on - strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.727 kb on + strand, within AO353_03700 at 791.969 kb on + strand, within AO353_03700 at 791.969 kb on + strand, within AO353_03700 at 791.969 kb on + strand, within AO353_03700 at 791.969 kb on + strand, within AO353_03700 at 791.969 kb on + strand, within AO353_03700 at 791.969 kb on + strand, within AO353_03700 at 791.969 kb on + strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 791.970 kb on - strand, within AO353_03700 at 792.071 kb on + strand, within AO353_03700 at 792.072 kb on - strand, within AO353_03700 at 792.125 kb on - strand, within AO353_03700 at 792.125 kb on - strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.258 kb on - strand, within AO353_03700 at 792.259 kb on + strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.424 kb on + strand, within AO353_03700 at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 789,845 + AO353_03690 0.14 +0.3 789,845 + AO353_03690 0.14 -0.7 789,846 - AO353_03690 0.14 -1.3 789,846 - AO353_03690 0.14 -1.1 789,917 - AO353_03690 0.20 +2.3 789,917 - AO353_03690 0.20 -1.1 789,917 - AO353_03690 0.20 +1.7 789,948 + AO353_03690 0.23 -1.1 789,948 + AO353_03690 0.23 -1.1 789,949 - AO353_03690 0.23 -2.4 789,949 - AO353_03690 0.23 -3.1 789,949 - AO353_03690 0.23 +0.8 789,949 - AO353_03690 0.23 -0.7 789,965 + AO353_03690 0.25 -1.4 789,966 - AO353_03690 0.25 +2.1 790,028 + AO353_03690 0.30 +2.3 790,028 + AO353_03690 0.30 -0.4 790,028 + AO353_03690 0.30 -2.7 790,028 + AO353_03690 0.30 +0.3 790,028 + AO353_03690 0.30 -1.6 790,028 + AO353_03690 0.30 +3.7 790,029 - AO353_03690 0.30 -1.6 790,029 - AO353_03690 0.30 -0.4 790,029 - AO353_03690 0.30 -0.5 790,097 + AO353_03690 0.36 -0.4 790,097 + AO353_03690 0.36 +0.9 790,097 + AO353_03690 0.36 -0.7 790,097 + AO353_03690 0.36 +0.1 790,097 + AO353_03690 0.36 +2.1 790,097 + AO353_03690 0.36 +0.3 790,097 + AO353_03690 0.36 +2.5 790,097 + AO353_03690 0.36 +1.9 790,097 + AO353_03690 0.36 -0.4 790,097 + AO353_03690 0.36 +1.3 790,098 - AO353_03690 0.37 -1.6 790,098 - AO353_03690 0.37 +0.9 790,098 - AO353_03690 0.37 +0.9 790,098 - AO353_03690 0.37 -0.1 790,098 - AO353_03690 0.37 +2.7 790,098 - AO353_03690 0.37 -2.2 790,098 - AO353_03690 0.37 -0.4 790,098 - AO353_03690 0.37 +1.8 790,098 - AO353_03690 0.37 -0.4 790,098 - AO353_03690 0.37 +0.9 790,098 - AO353_03690 0.37 +2.2 790,098 - AO353_03690 0.37 -1.6 790,112 + AO353_03690 0.38 -1.1 790,113 - AO353_03690 0.38 -0.7 790,293 + AO353_03690 0.54 -1.6 790,294 - AO353_03690 0.54 -1.3 790,608 + AO353_03690 0.83 -0.4 790,608 + AO353_03690 0.83 -0.4 790,608 + AO353_03690 0.83 -0.9 790,609 - AO353_03690 0.83 -0.2 790,624 + AO353_03690 0.84 -1.3 790,624 + AO353_03690 0.84 -0.7 790,624 + AO353_03690 0.84 -0.4 790,624 + AO353_03690 0.84 +1.3 790,672 + AO353_03690 0.88 +1.1 790,672 + AO353_03690 0.88 +0.8 790,672 + AO353_03690 0.88 +1.7 790,672 + AO353_03690 0.88 -0.1 790,672 + AO353_03690 0.88 +1.5 790,672 + AO353_03690 0.88 +1.7 790,672 + AO353_03690 0.88 -0.1 790,673 - AO353_03690 0.88 +0.9 790,673 - AO353_03690 0.88 -0.9 790,673 - AO353_03690 0.88 +1.9 790,673 - AO353_03690 0.88 -0.1 790,673 - AO353_03690 0.88 -2.6 790,673 - AO353_03690 0.88 -0.7 790,673 - AO353_03690 0.88 -0.4 790,673 - AO353_03690 0.88 +1.6 790,689 - AO353_03690 0.90 -0.7 790,715 + +0.6 790,715 + -0.1 790,715 + -1.1 790,716 - -1.4 790,716 - -0.4 790,716 - -0.9 790,716 - -1.0 790,716 - +1.6 790,754 + -1.1 790,755 - -0.7 790,757 + -0.5 790,757 + -2.0 790,758 - +1.0 790,758 - -0.7 790,758 - +0.7 790,866 + -1.1 791,028 + AO353_03695 0.29 -0.9 791,031 + AO353_03695 0.29 +0.3 791,031 + AO353_03695 0.29 -0.1 791,031 + AO353_03695 0.29 +0.3 791,031 + AO353_03695 0.29 -1.9 791,031 + AO353_03695 0.29 -2.5 791,032 - AO353_03695 0.30 -0.8 791,032 - AO353_03695 0.30 +2.6 791,032 - AO353_03695 0.30 +0.3 791,032 - AO353_03695 0.30 -2.2 791,032 - AO353_03695 0.30 -1.1 791,032 - +1.9 791,092 - AO353_03695 0.37 -0.5 791,092 - AO353_03695 0.37 -1.8 791,092 - AO353_03695 0.37 -1.5 791,092 - AO353_03695 0.37 -0.7 791,092 - AO353_03695 0.37 -0.1 791,092 - AO353_03695 0.37 +0.3 791,112 + AO353_03695 0.40 +0.0 791,112 + AO353_03695 0.40 -0.5 791,113 - AO353_03695 0.40 -2.5 791,113 - AO353_03695 0.40 +1.6 791,113 - AO353_03695 0.40 -1.8 791,113 - AO353_03695 0.40 +0.3 791,113 - AO353_03695 0.40 -0.1 791,113 - AO353_03695 0.40 +1.3 791,262 + AO353_03695 0.60 -1.1 791,262 + AO353_03695 0.60 -0.7 791,262 + AO353_03695 0.60 +1.5 791,263 - AO353_03695 0.60 +0.5 791,263 - AO353_03695 0.60 -1.3 791,263 - AO353_03695 0.60 -1.5 791,428 + AO353_03695 0.81 -0.1 791,429 - AO353_03695 0.81 -0.1 791,429 - AO353_03695 0.81 -0.9 791,466 + AO353_03695 0.86 +1.9 791,466 + AO353_03695 0.86 +2.5 791,558 + -0.1 791,559 - +0.3 791,622 + -0.7 791,623 - +1.2 791,643 + -0.1 791,643 + +0.4 791,643 + -1.7 791,643 + +1.9 791,643 + -0.9 791,644 - -1.3 791,644 - -0.5 791,644 - -1.5 791,644 - -0.9 791,727 + AO353_03700 0.16 -1.1 791,969 + AO353_03700 0.40 -0.5 791,969 + AO353_03700 0.40 -1.1 791,969 + AO353_03700 0.40 +0.9 791,969 + AO353_03700 0.40 +0.1 791,969 + AO353_03700 0.40 +1.4 791,969 + AO353_03700 0.40 -0.7 791,969 + AO353_03700 0.40 -1.1 791,970 - AO353_03700 0.40 -1.7 791,970 - AO353_03700 0.40 -1.7 791,970 - AO353_03700 0.40 +3.9 791,970 - AO353_03700 0.40 -0.5 791,970 - AO353_03700 0.40 -0.9 791,970 - AO353_03700 0.40 +0.9 791,970 - AO353_03700 0.40 +0.9 791,970 - AO353_03700 0.40 -3.2 791,970 - AO353_03700 0.40 -2.1 791,970 - AO353_03700 0.40 +1.6 791,970 - AO353_03700 0.40 +0.4 791,970 - AO353_03700 0.40 +0.9 791,970 - AO353_03700 0.40 +0.5 791,970 - AO353_03700 0.40 -1.6 791,970 - AO353_03700 0.40 -0.9 792,071 + AO353_03700 0.51 +2.3 792,072 - AO353_03700 0.51 +1.2 792,125 - AO353_03700 0.56 -0.1 792,125 - AO353_03700 0.56 -1.5 792,222 + AO353_03700 0.66 -0.5 792,222 + AO353_03700 0.66 +2.9 792,222 + AO353_03700 0.66 -0.9 792,223 - AO353_03700 0.66 -1.5 792,223 - AO353_03700 0.66 -1.5 792,223 - AO353_03700 0.66 +2.7 792,223 - AO353_03700 0.66 -1.6 792,258 - AO353_03700 0.69 -1.5 792,259 + AO353_03700 0.69 -1.7 792,260 - AO353_03700 0.70 -2.2 792,260 - AO353_03700 0.70 +0.3 792,260 - AO353_03700 0.70 -1.4 792,260 - AO353_03700 0.70 -1.7 792,269 + AO353_03700 0.70 -2.1 792,269 + AO353_03700 0.70 +0.3 792,269 + AO353_03700 0.70 +1.0 792,270 - AO353_03700 0.71 -0.7 792,270 - AO353_03700 0.71 +0.3 792,270 - AO353_03700 0.71 -1.5 792,270 - AO353_03700 0.71 -2.4 792,424 + AO353_03700 0.86 -2.5 792,470 + +0.9 792,470 + -0.1 792,470 + -2.9 792,470 + -2.2 792,470 + +1.5 792,470 + -0.5 792,471 - -1.9 792,471 - -0.5 792,471 - +0.9 792,471 - +0.3 792,471 - +1.4 792,471 - +0.3 792,471 - -0.5 792,471 - +2.8 792,471 - +0.3 792,471 - -0.0 792,473 + +0.3 792,473 + -1.7 792,473 + -1.1 792,473 + +0.9 792,473 + -1.7 792,473 + +2.3 792,473 + +1.5 792,473 + -1.4 792,473 + -2.1 792,473 + -1.1 792,474 - +0.7 792,474 - -1.1 792,474 - +1.9 792,474 - +0.7 792,479 + +2.0 792,479 + -1.1 792,479 + +0.9 792,479 + -1.7 792,479 + +1.7 792,479 + +1.4 792,479 + +0.5 792,480 - -1.3 792,480 - -0.3 792,480 - -0.5 792,480 - -2.0 792,480 - +0.3
Or see this region's nucleotide sequence