Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03410

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03405 and AO353_03410 overlap by 11 nucleotidesAO353_03410 and AO353_03415 are separated by 206 nucleotides AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926 _03405 AO353_03410: AO353_03410 - chemotaxis protein CheY, at 726,916 to 727,647 _03410 AO353_03415: AO353_03415 - glucokinase, at 727,854 to 728,804 _03415 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 726.113 kb on + strand, within AO353_03405at 726.114 kb on - strand, within AO353_03405at 726.251 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.331 kb on + strand, within AO353_03405at 726.332 kb on - strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.434 kb on - strand, within AO353_03405at 726.434 kb on - strand, within AO353_03405at 726.521 kb on + strand, within AO353_03405at 726.521 kb on + strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.937 kb on + strandat 726.937 kb on + strandat 726.938 kb on - strandat 726.938 kb on - strandat 726.938 kb on - strandat 727.280 kb on - strand, within AO353_03410at 727.280 kb on - strand, within AO353_03410at 727.334 kb on + strand, within AO353_03410at 727.335 kb on - strand, within AO353_03410at 727.577 kb on + strandat 727.577 kb on + strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.597 kb on + strandat 727.597 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.683 kb on + strandat 727.683 kb on + strandat 727.684 kb on - strandat 727.684 kb on - strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.897 kb on + strandat 727.898 kb on - strandat 727.936 kb on + strandat 727.936 kb on + strandat 727.936 kb on + strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 728.029 kb on + strandat 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.207 kb on - strand, within AO353_03415at 728.269 kb on + strand, within AO353_03415at 728.269 kb on + strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.582 kb on + strand, within AO353_03415at 728.582 kb on + strand, within AO353_03415

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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726,113 + AO353_03405 0.44 -0.1
726,114 - AO353_03405 0.44 +1.3
726,251 + AO353_03405 0.54 -0.4
726,329 + AO353_03405 0.59 -2.1
726,329 + AO353_03405 0.59 -0.4
726,329 + AO353_03405 0.59 +1.1
726,329 + AO353_03405 0.59 +0.3
726,329 + AO353_03405 0.59 +1.4
726,331 + AO353_03405 0.59 +2.1
726,332 - AO353_03405 0.59 +1.9
726,358 + AO353_03405 0.61 +0.1
726,358 + AO353_03405 0.61 +1.7
726,358 + AO353_03405 0.61 +0.9
726,358 + AO353_03405 0.61 -1.9
726,359 - AO353_03405 0.61 -2.0
726,359 - AO353_03405 0.61 -0.4
726,359 - AO353_03405 0.61 -1.6
726,359 - AO353_03405 0.61 +0.7
726,359 - AO353_03405 0.61 +2.9
726,434 - AO353_03405 0.66 -1.1
726,434 - AO353_03405 0.66 -1.6
726,521 + AO353_03405 0.72 +1.9
726,521 + AO353_03405 0.72 -1.3
726,522 - AO353_03405 0.72 -1.6
726,522 - AO353_03405 0.72 +0.9
726,522 - AO353_03405 0.72 +3.8
726,522 - AO353_03405 0.72 -1.9
726,522 - AO353_03405 0.72 -0.1
726,522 - AO353_03405 0.72 -0.9
726,715 + AO353_03405 0.86 +3.2
726,715 + AO353_03405 0.86 -0.4
726,715 + AO353_03405 0.86 +1.9
726,715 + AO353_03405 0.86 -0.9
726,715 + AO353_03405 0.86 -0.4
726,715 + AO353_03405 0.86 -0.1
726,937 + +2.3
726,937 + +2.1
726,938 - +2.0
726,938 - -0.1
726,938 - -0.3
727,280 - AO353_03410 0.50 -1.1
727,280 - AO353_03410 0.50 -2.3
727,334 + AO353_03410 0.57 -1.1
727,335 - AO353_03410 0.57 -0.1
727,577 + -0.7
727,577 + -0.7
727,578 - +2.2
727,578 - -0.4
727,578 - +3.5
727,578 - +0.8
727,578 - +0.9
727,578 - -1.1
727,597 + +1.7
727,597 + -1.1
727,667 + +1.9
727,667 + +0.0
727,667 + +2.5
727,667 + -0.4
727,667 + +1.9
727,683 + -0.7
727,683 + -1.3
727,684 - -1.9
727,684 - +1.0
727,852 + -0.4
727,852 + +1.1
727,852 + +0.2
727,852 + +1.3
727,897 + -0.4
727,898 - -0.9
727,936 + +2.5
727,936 + -1.1
727,936 + -1.7
727,937 - -1.7
727,937 - +1.2
727,937 - +0.9
727,937 - -2.2
727,937 - -0.1
727,937 - -0.4
727,937 - -1.1
728,029 + +0.3
728,029 + AO353_03415 0.18 -2.1
728,029 + AO353_03415 0.18 -0.9
728,029 + AO353_03415 0.18 -0.4
728,029 + AO353_03415 0.18 +0.6
728,029 + AO353_03415 0.18 +2.4
728,029 + AO353_03415 0.18 +0.3
728,029 + AO353_03415 0.18 +2.7
728,030 - AO353_03415 0.19 -1.1
728,030 - AO353_03415 0.19 -0.4
728,030 - AO353_03415 0.19 +0.9
728,030 - AO353_03415 0.19 -2.0
728,030 - AO353_03415 0.19 -0.4
728,030 - AO353_03415 0.19 +1.3
728,030 - AO353_03415 0.19 -0.2
728,207 - AO353_03415 0.37 +2.6
728,269 + AO353_03415 0.44 +3.7
728,269 + AO353_03415 0.44 -1.7
728,270 - AO353_03415 0.44 -0.1
728,270 - AO353_03415 0.44 +1.4
728,270 - AO353_03415 0.44 -0.7
728,270 - AO353_03415 0.44 -0.1
728,582 + AO353_03415 0.77 +2.9
728,582 + AO353_03415 0.77 +0.3

Or see this region's nucleotide sequence