Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02860

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02850 and AO353_02855 are separated by 15 nucleotidesAO353_02855 and AO353_02860 are separated by 3 nucleotidesAO353_02860 and AO353_02865 are separated by 249 nucleotides AO353_02850: AO353_02850 - flagellar biosynthesis protein FlgD, at 607,323 to 608,051 _02850 AO353_02855: AO353_02855 - flagellar basal-body rod protein FlgC, at 608,067 to 608,510 _02855 AO353_02860: AO353_02860 - flagellar biosynthesis protein FlgB, at 608,514 to 608,921 _02860 AO353_02865: AO353_02865 - chemotaxis protein, at 609,171 to 609,998 _02865 Position (kb) 608 609Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 607.520 kb on + strand, within AO353_02850at 607.613 kb on + strand, within AO353_02850at 607.764 kb on - strand, within AO353_02850at 607.787 kb on + strand, within AO353_02850at 607.787 kb on + strand, within AO353_02850at 607.943 kb on + strand, within AO353_02850at 608.052 kb on - strandat 608.066 kb on - strandat 608.195 kb on - strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.203 kb on + strand, within AO353_02855at 608.203 kb on + strand, within AO353_02855at 608.204 kb on - strand, within AO353_02855at 608.204 kb on - strand, within AO353_02855at 608.272 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.386 kb on + strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.433 kb on - strand, within AO353_02855at 608.493 kb on + strandat 608.493 kb on + strandat 608.493 kb on + strandat 608.493 kb on + strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.535 kb on + strandat 608.602 kb on + strand, within AO353_02860at 608.602 kb on + strand, within AO353_02860at 608.603 kb on - strandat 608.603 kb on - strand, within AO353_02860at 608.603 kb on - strand, within AO353_02860at 608.669 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.963 kb on - strandat 608.964 kb on + strandat 608.965 kb on - strandat 608.965 kb on - strandat 608.965 kb on - strandat 608.997 kb on - strandat 609.099 kb on + strandat 609.100 kb on - strandat 609.100 kb on - strandat 609.184 kb on + strandat 609.184 kb on + strandat 609.184 kb on + strandat 609.184 kb on + strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.265 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.339 kb on + strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.383 kb on - strand, within AO353_02865at 609.383 kb on - strand, within AO353_02865at 609.472 kb on + strand, within AO353_02865at 609.472 kb on + strand, within AO353_02865at 609.473 kb on - strand, within AO353_02865at 609.473 kb on - strand, within AO353_02865at 609.523 kb on + strand, within AO353_02865at 609.524 kb on - strand, within AO353_02865at 609.524 kb on - strand, within AO353_02865at 609.605 kb on + strand, within AO353_02865at 609.646 kb on + strand, within AO353_02865at 609.754 kb on + strand, within AO353_02865at 609.754 kb on + strand, within AO353_02865at 609.755 kb on - strand, within AO353_02865at 609.755 kb on - strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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607,520 + AO353_02850 0.27 -0.8
607,613 + AO353_02850 0.40 -1.0
607,764 - AO353_02850 0.60 -0.5
607,787 + AO353_02850 0.64 +0.2
607,787 + AO353_02850 0.64 -1.8
607,943 + AO353_02850 0.85 +1.8
608,052 - +1.6
608,066 - +3.3
608,195 - AO353_02855 0.29 -1.7
608,197 + AO353_02855 0.29 -1.7
608,197 + AO353_02855 0.29 +1.8
608,197 + AO353_02855 0.29 +2.0
608,197 + AO353_02855 0.29 -0.0
608,197 + AO353_02855 0.29 +0.8
608,197 + AO353_02855 0.29 -0.0
608,197 + AO353_02855 0.29 +0.5
608,197 + AO353_02855 0.29 -0.8
608,198 - AO353_02855 0.30 +2.5
608,198 - AO353_02855 0.30 +1.2
608,198 - AO353_02855 0.30 +0.5
608,198 - AO353_02855 0.30 +2.3
608,198 - AO353_02855 0.30 +0.2
608,198 - AO353_02855 0.30 +0.7
608,198 - AO353_02855 0.30 -0.2
608,198 - AO353_02855 0.30 +0.8
608,203 + AO353_02855 0.31 -2.2
608,203 + AO353_02855 0.31 -1.9
608,204 - AO353_02855 0.31 +0.8
608,204 - AO353_02855 0.31 +2.2
608,272 - AO353_02855 0.46 +1.8
608,281 - AO353_02855 0.48 +0.5
608,281 - AO353_02855 0.48 -1.0
608,281 - AO353_02855 0.48 +3.4
608,281 - AO353_02855 0.48 -1.2
608,281 - AO353_02855 0.48 +1.3
608,386 + AO353_02855 0.72 -0.2
608,387 - AO353_02855 0.72 -0.5
608,387 - AO353_02855 0.72 +2.3
608,387 - AO353_02855 0.72 +1.1
608,387 - AO353_02855 0.72 +1.1
608,433 - AO353_02855 0.82 +0.2
608,493 + +0.5
608,493 + -0.5
608,493 + +0.2
608,493 + +0.9
608,494 - -1.0
608,494 - +4.1
608,494 - -2.6
608,494 - +2.4
608,494 - +0.2
608,515 + -0.5
608,515 + +0.2
608,515 + -1.8
608,515 + -1.4
608,515 + +3.4
608,515 + -1.0
608,515 + -1.0
608,515 + -1.9
608,516 - +0.2
608,516 - +1.8
608,516 - +2.1
608,516 - +1.7
608,516 - -1.4
608,535 + -0.5
608,602 + AO353_02860 0.22 -0.5
608,602 + AO353_02860 0.22 +0.3
608,603 - +0.2
608,603 - AO353_02860 0.22 +2.4
608,603 - AO353_02860 0.22 +0.5
608,669 - AO353_02860 0.38 +1.8
608,697 - AO353_02860 0.45 +2.8
608,697 - AO353_02860 0.45 +1.5
608,697 - AO353_02860 0.45 +1.9
608,697 - AO353_02860 0.45 +0.2
608,809 + AO353_02860 0.72 -1.7
608,809 + AO353_02860 0.72 +0.1
608,809 + AO353_02860 0.72 -1.5
608,809 + AO353_02860 0.72 +0.8
608,809 + AO353_02860 0.72 +1.6
608,809 + AO353_02860 0.72 +0.8
608,809 + AO353_02860 0.72 +0.6
608,809 + AO353_02860 0.72 +0.6
608,809 + AO353_02860 0.72 -1.0
608,810 - AO353_02860 0.73 -0.5
608,810 - AO353_02860 0.73 +2.3
608,810 - AO353_02860 0.73 +0.8
608,810 - AO353_02860 0.73 -1.0
608,963 - +2.2
608,964 + +0.2
608,965 - +0.8
608,965 - -0.1
608,965 - +1.1
608,997 - +0.0
609,099 + +0.2
609,100 - +1.6
609,100 - +1.0
609,184 + -0.4
609,184 + -2.1
609,184 + +1.0
609,184 + +4.3
609,185 - +2.7
609,185 - +1.3
609,185 - -0.5
609,185 - +2.1
609,185 - +2.1
609,265 + AO353_02865 0.11 +0.4
609,331 + AO353_02865 0.19 +0.6
609,331 + AO353_02865 0.19 -1.2
609,331 + AO353_02865 0.19 +0.6
609,331 + AO353_02865 0.19 -1.7
609,331 + AO353_02865 0.19 +1.6
609,331 + AO353_02865 0.19 -1.7
609,332 - AO353_02865 0.19 -0.5
609,332 - AO353_02865 0.19 -2.0
609,332 - AO353_02865 0.19 +2.5
609,332 - AO353_02865 0.19 -0.7
609,332 - AO353_02865 0.19 -0.2
609,332 - AO353_02865 0.19 +0.5
609,332 - AO353_02865 0.19 +1.8
609,339 + AO353_02865 0.20 +0.8
609,340 - AO353_02865 0.20 -1.7
609,340 - AO353_02865 0.20 +0.2
609,340 - AO353_02865 0.20 -1.4
609,340 - AO353_02865 0.20 -1.8
609,340 - AO353_02865 0.20 +0.6
609,340 - AO353_02865 0.20 -0.8
609,340 - AO353_02865 0.20 -0.3
609,340 - AO353_02865 0.20 -0.5
609,382 + AO353_02865 0.25 +1.8
609,382 + AO353_02865 0.25 +0.2
609,382 + AO353_02865 0.25 -2.1
609,382 + AO353_02865 0.25 -2.1
609,382 + AO353_02865 0.25 -1.2
609,382 + AO353_02865 0.25 +1.4
609,382 + AO353_02865 0.25 +1.2
609,382 + AO353_02865 0.25 -2.1
609,383 - AO353_02865 0.26 +0.1
609,383 - AO353_02865 0.26 +2.0
609,472 + AO353_02865 0.36 -0.5
609,472 + AO353_02865 0.36 -0.8
609,473 - AO353_02865 0.36 +2.1
609,473 - AO353_02865 0.36 +2.8
609,523 + AO353_02865 0.43 +2.4
609,524 - AO353_02865 0.43 -2.5
609,524 - AO353_02865 0.43 -0.8
609,605 + AO353_02865 0.52 -0.5
609,646 + AO353_02865 0.57 +0.5
609,754 + AO353_02865 0.70 -0.8
609,754 + AO353_02865 0.70 -1.2
609,755 - AO353_02865 0.71 +2.3
609,755 - AO353_02865 0.71 -2.0
609,913 + AO353_02865 0.90 +0.8
609,913 + AO353_02865 0.90 +1.8
609,913 + AO353_02865 0.90 -2.7
609,913 + AO353_02865 0.90 +1.5
609,913 + AO353_02865 0.90 -1.1
609,913 + AO353_02865 0.90 +0.2
609,914 - AO353_02865 0.90 +0.2
609,914 - AO353_02865 0.90 +3.1
609,914 - AO353_02865 0.90 -1.0
609,914 - AO353_02865 0.90 -0.5
609,914 - AO353_02865 0.90 -0.5
609,914 - AO353_02865 0.90 +0.8
609,914 - AO353_02865 0.90 +0.2

Or see this region's nucleotide sequence