Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02810 and AO353_02815 overlap by 4 nucleotides AO353_02815 and AO353_02820 are separated by 239 nucleotides
AO353_02810: AO353_02810 - histidine kinase, at 595,696 to 597,042
_02810
AO353_02815: AO353_02815 - transcriptional regulator, at 597,039 to 597,716
_02815
AO353_02820: AO353_02820 - dienelactone hydrolase, at 597,956 to 598,747
_02820
Position (kb) 597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 596.148 kb on + strand, within AO353_02810 at 596.148 kb on + strand, within AO353_02810 at 596.149 kb on - strand, within AO353_02810 at 596.175 kb on - strand, within AO353_02810 at 596.543 kb on + strand, within AO353_02810 at 596.579 kb on + strand, within AO353_02810 at 596.579 kb on + strand, within AO353_02810 at 596.607 kb on + strand, within AO353_02810 at 596.626 kb on - strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.655 kb on - strand, within AO353_02810 at 596.655 kb on - strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.887 kb on + strand, within AO353_02810 at 596.887 kb on + strand, within AO353_02810 at 597.064 kb on + strand at 597.064 kb on + strand at 597.065 kb on - strand at 597.238 kb on + strand, within AO353_02815 at 597.238 kb on + strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.260 kb on - strand, within AO353_02815 at 597.350 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.425 kb on - strand, within AO353_02815 at 597.425 kb on - strand at 597.425 kb on - strand, within AO353_02815 at 597.425 kb on - strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.605 kb on - strand, within AO353_02815 at 597.605 kb on - strand, within AO353_02815 at 597.605 kb on - strand at 597.605 kb on - strand, within AO353_02815 at 597.752 kb on + strand at 597.752 kb on + strand at 597.753 kb on - strand at 597.753 kb on - strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.775 kb on - strand at 597.775 kb on - strand at 597.775 kb on - strand at 597.852 kb on + strand at 597.853 kb on - strand at 597.853 kb on - strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.882 kb on - strand at 597.920 kb on + strand at 597.920 kb on + strand at 597.921 kb on - strand at 597.940 kb on + strand at 597.940 kb on + strand at 597.941 kb on - strand at 597.941 kb on - strand at 597.963 kb on + strand at 597.964 kb on - strand at 597.981 kb on + strand at 597.981 kb on + strand at 597.982 kb on - strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.035 kb on - strand at 598.035 kb on - strand at 598.035 kb on - strand at 598.067 kb on + strand, within AO353_02820 at 598.067 kb on + strand, within AO353_02820 at 598.067 kb on + strand, within AO353_02820 at 598.068 kb on - strand, within AO353_02820 at 598.068 kb on - strand, within AO353_02820 at 598.070 kb on + strand, within AO353_02820 at 598.070 kb on + strand, within AO353_02820 at 598.070 kb on + strand, within AO353_02820 at 598.071 kb on - strand, within AO353_02820 at 598.071 kb on - strand, within AO353_02820 at 598.071 kb on - strand, within AO353_02820 at 598.071 kb on - strand, within AO353_02820 at 598.076 kb on + strand, within AO353_02820 at 598.076 kb on + strand, within AO353_02820 at 598.145 kb on + strand, within AO353_02820 at 598.145 kb on + strand, within AO353_02820 at 598.146 kb on - strand, within AO353_02820 at 598.146 kb on - strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.204 kb on + strand, within AO353_02820 at 598.205 kb on - strand, within AO353_02820 at 598.205 kb on - strand, within AO353_02820 at 598.205 kb on - strand, within AO353_02820 at 598.205 kb on - strand, within AO353_02820 at 598.205 kb on - strand, within AO353_02820 at 598.205 kb on - strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.208 kb on + strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.209 kb on - strand, within AO353_02820 at 598.446 kb on + strand, within AO353_02820 at 598.446 kb on + strand, within AO353_02820 at 598.447 kb on - strand, within AO353_02820 at 598.494 kb on + strand, within AO353_02820 at 598.495 kb on - strand, within AO353_02820 at 598.495 kb on - strand, within AO353_02820 at 598.495 kb on - strand, within AO353_02820 at 598.500 kb on + strand, within AO353_02820 at 598.501 kb on - strand, within AO353_02820 at 598.584 kb on - strand, within AO353_02820 at 598.584 kb on - strand, within AO353_02820 at 598.584 kb on - strand, within AO353_02820 at 598.584 kb on - strand, within AO353_02820 at 598.584 kb on - strand, within AO353_02820 at 598.584 kb on - strand, within AO353_02820 at 598.584 kb on - strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.585 kb on + strand, within AO353_02820 at 598.586 kb on - strand, within AO353_02820 at 598.586 kb on - strand, within AO353_02820 at 598.586 kb on - strand, within AO353_02820 at 598.586 kb on - strand, within AO353_02820 at 598.586 kb on - strand, within AO353_02820 at 598.586 kb on - strand, within AO353_02820 at 598.679 kb on + strand at 598.679 kb on + strand at 598.680 kb on - strand at 598.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 596,148 + AO353_02810 0.34 -0.5 596,148 + AO353_02810 0.34 +0.2 596,149 - AO353_02810 0.34 +0.8 596,175 - AO353_02810 0.36 -0.2 596,543 + AO353_02810 0.63 -1.9 596,579 + AO353_02810 0.66 -1.2 596,579 + AO353_02810 0.66 +0.8 596,607 + AO353_02810 0.68 -1.0 596,626 - AO353_02810 0.69 -0.2 596,654 + AO353_02810 0.71 -0.2 596,654 + AO353_02810 0.71 -0.8 596,654 + AO353_02810 0.71 -0.5 596,654 + AO353_02810 0.71 +0.8 596,655 - AO353_02810 0.71 +1.2 596,655 - AO353_02810 0.71 +0.2 596,789 + AO353_02810 0.81 -1.5 596,789 + AO353_02810 0.81 -2.5 596,789 + AO353_02810 0.81 -0.8 596,789 + AO353_02810 0.81 +2.9 596,789 + AO353_02810 0.81 -1.5 596,789 + AO353_02810 0.81 -1.7 596,789 + AO353_02810 0.81 -2.2 596,789 + AO353_02810 0.81 -0.5 596,789 + AO353_02810 0.81 -2.9 596,790 - AO353_02810 0.81 -0.8 596,790 - AO353_02810 0.81 -0.8 596,790 - AO353_02810 0.81 -1.8 596,790 - AO353_02810 0.81 -1.0 596,795 + AO353_02810 0.82 +0.8 596,795 + AO353_02810 0.82 -1.8 596,795 + AO353_02810 0.82 +0.2 596,795 + AO353_02810 0.82 -0.6 596,795 + AO353_02810 0.82 +2.0 596,796 - AO353_02810 0.82 -0.8 596,796 - AO353_02810 0.82 -1.0 596,796 - AO353_02810 0.82 +2.5 596,887 + AO353_02810 0.88 +0.2 596,887 + AO353_02810 0.88 -1.2 597,064 + -2.7 597,064 + -2.5 597,065 - +0.8 597,238 + AO353_02815 0.29 -1.4 597,238 + AO353_02815 0.29 -0.8 597,239 - AO353_02815 0.29 -2.7 597,239 - AO353_02815 0.29 -1.0 597,239 - AO353_02815 0.29 -2.5 597,260 - AO353_02815 0.33 +1.2 597,350 + AO353_02815 0.46 -0.1 597,424 + AO353_02815 0.57 +0.2 597,424 + AO353_02815 0.57 -1.1 597,424 + AO353_02815 0.57 -0.0 597,425 - AO353_02815 0.57 -0.2 597,425 - +1.8 597,425 - AO353_02815 0.57 +0.8 597,425 - AO353_02815 0.57 -1.5 597,604 + AO353_02815 0.83 -0.2 597,604 + AO353_02815 0.83 -0.5 597,604 + AO353_02815 0.83 -0.2 597,605 - AO353_02815 0.83 +1.2 597,605 - AO353_02815 0.83 +0.2 597,605 - +0.2 597,605 - AO353_02815 0.83 -1.7 597,752 + -1.2 597,752 + -0.8 597,753 - -0.8 597,753 - -2.1 597,771 + -0.8 597,771 + +1.8 597,771 + -0.5 597,771 + -2.2 597,771 + -0.1 597,772 - -0.2 597,772 - -0.2 597,772 - +1.8 597,772 - +2.0 597,774 + -2.0 597,774 + +0.8 597,774 + +0.2 597,774 + -1.0 597,775 - +4.6 597,775 - -1.4 597,775 - +1.8 597,852 + +1.0 597,853 - +0.1 597,853 - +1.1 597,876 + -2.7 597,876 + -1.7 597,876 + +0.3 597,876 + -1.4 597,876 + +0.2 597,876 + +0.8 597,876 + +2.0 597,876 + -0.5 597,876 + +1.8 597,876 + -1.2 597,876 + -1.2 597,876 + -1.2 597,876 + -0.2 597,877 - +0.8 597,877 - +1.7 597,877 - +0.8 597,877 - -2.6 597,877 - -2.6 597,877 - -1.2 597,877 - -0.4 597,877 - -2.4 597,877 - -2.4 597,877 - -0.5 597,877 - -0.2 597,877 - +2.2 597,882 - -1.4 597,920 + -2.8 597,920 + -0.2 597,921 - +0.5 597,940 + -1.0 597,940 + +0.2 597,941 - -0.8 597,941 - +0.8 597,963 + +1.6 597,964 - +1.0 597,981 + +0.2 597,981 + -0.8 597,982 - -2.0 598,034 + +1.8 598,034 + -2.5 598,034 + -0.8 598,034 + -0.8 598,035 - -1.8 598,035 - -0.3 598,035 - +1.2 598,067 + AO353_02820 0.14 -0.8 598,067 + AO353_02820 0.14 +1.1 598,067 + AO353_02820 0.14 +0.2 598,068 - AO353_02820 0.14 +4.9 598,068 - AO353_02820 0.14 -0.5 598,070 + AO353_02820 0.14 +1.8 598,070 + AO353_02820 0.14 -0.5 598,070 + AO353_02820 0.14 +4.2 598,071 - AO353_02820 0.15 -0.2 598,071 - AO353_02820 0.15 +1.4 598,071 - AO353_02820 0.15 -1.0 598,071 - AO353_02820 0.15 -0.5 598,076 + AO353_02820 0.15 +2.3 598,076 + AO353_02820 0.15 -0.2 598,145 + AO353_02820 0.24 -1.0 598,145 + AO353_02820 0.24 +2.9 598,146 - AO353_02820 0.24 -2.7 598,146 - AO353_02820 0.24 -1.4 598,204 + AO353_02820 0.31 +0.2 598,204 + AO353_02820 0.31 +1.6 598,204 + AO353_02820 0.31 +0.2 598,204 + AO353_02820 0.31 +2.2 598,204 + AO353_02820 0.31 +1.8 598,204 + AO353_02820 0.31 +0.3 598,204 + AO353_02820 0.31 +1.5 598,204 + AO353_02820 0.31 -3.3 598,205 - AO353_02820 0.31 -2.5 598,205 - AO353_02820 0.31 -1.7 598,205 - AO353_02820 0.31 -2.0 598,205 - AO353_02820 0.31 +0.4 598,205 - AO353_02820 0.31 +0.6 598,205 - AO353_02820 0.31 +0.8 598,208 + AO353_02820 0.32 -1.0 598,208 + AO353_02820 0.32 -0.8 598,208 + AO353_02820 0.32 +0.2 598,208 + AO353_02820 0.32 -1.0 598,208 + AO353_02820 0.32 +0.9 598,208 + AO353_02820 0.32 +0.4 598,208 + AO353_02820 0.32 -0.5 598,208 + AO353_02820 0.32 +1.9 598,209 - AO353_02820 0.32 -0.7 598,209 - AO353_02820 0.32 -0.5 598,209 - AO353_02820 0.32 -0.2 598,209 - AO353_02820 0.32 +0.8 598,209 - AO353_02820 0.32 +2.4 598,209 - AO353_02820 0.32 +0.1 598,209 - AO353_02820 0.32 -1.5 598,209 - AO353_02820 0.32 -2.0 598,209 - AO353_02820 0.32 +2.2 598,209 - AO353_02820 0.32 -0.8 598,209 - AO353_02820 0.32 -0.2 598,209 - AO353_02820 0.32 -1.4 598,209 - AO353_02820 0.32 +0.5 598,209 - AO353_02820 0.32 -0.0 598,209 - AO353_02820 0.32 +1.8 598,446 + AO353_02820 0.62 -2.4 598,446 + AO353_02820 0.62 -0.2 598,447 - AO353_02820 0.62 -2.4 598,494 + AO353_02820 0.68 -1.0 598,495 - AO353_02820 0.68 -1.4 598,495 - AO353_02820 0.68 -1.2 598,495 - AO353_02820 0.68 +2.4 598,500 + AO353_02820 0.69 -2.3 598,501 - AO353_02820 0.69 -1.9 598,584 - AO353_02820 0.79 -0.8 598,584 - AO353_02820 0.79 +1.4 598,584 - AO353_02820 0.79 +1.8 598,584 - AO353_02820 0.79 +0.9 598,584 - AO353_02820 0.79 -1.2 598,584 - AO353_02820 0.79 +1.4 598,584 - AO353_02820 0.79 -1.5 598,585 + AO353_02820 0.79 -0.4 598,585 + AO353_02820 0.79 -1.7 598,585 + AO353_02820 0.79 -1.2 598,585 + AO353_02820 0.79 -0.2 598,585 + AO353_02820 0.79 -2.2 598,585 + AO353_02820 0.79 -1.2 598,585 + AO353_02820 0.79 -0.8 598,585 + AO353_02820 0.79 +0.5 598,585 + AO353_02820 0.79 +3.3 598,585 + AO353_02820 0.79 -2.1 598,586 - AO353_02820 0.80 +2.8 598,586 - AO353_02820 0.80 +0.8 598,586 - AO353_02820 0.80 +1.8 598,586 - AO353_02820 0.80 -0.8 598,586 - AO353_02820 0.80 -0.5 598,586 - AO353_02820 0.80 -0.5 598,679 + +1.5 598,679 + -1.0 598,680 - -1.4 598,680 - +1.9
Or see this region's nucleotide sequence