Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02755

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02745 and AO353_02750 overlap by 1 nucleotidesAO353_02750 and AO353_02755 are separated by 196 nucleotidesAO353_02755 and AO353_02760 are separated by 116 nucleotidesAO353_02760 and AO353_02765 overlap by 4 nucleotides AO353_02745: AO353_02745 - hypothetical protein, at 585,164 to 585,598 _02745 AO353_02750: AO353_02750 - hypothetical protein, at 585,598 to 586,002 _02750 AO353_02755: AO353_02755 - peroxiredoxin, at 586,199 to 586,666 _02755 AO353_02760: AO353_02760 - arsenate reductase, at 586,783 to 587,136 _02760 AO353_02765: AO353_02765 - NAD(P)H-quinone oxidoreductase, at 587,133 to 587,729 _02765 Position (kb) 586 587Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 585.597 kb on - strandat 585.597 kb on - strandat 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.724 kb on + strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.767 kb on - strand, within AO353_02750at 585.767 kb on - strand, within AO353_02750at 585.803 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 586.000 kb on + strandat 586.086 kb on + strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.124 kb on - strandat 586.124 kb on - strandat 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.510 kb on + strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.528 kb on - strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.569 kb on - strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755at 586.678 kb on + strandat 586.678 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.762 kb on + strandat 586.762 kb on + strandat 586.762 kb on + strandat 586.763 kb on - strandat 586.802 kb on - strandat 587.138 kb on + strandat 587.139 kb on - strandat 587.139 kb on - strandat 587.139 kb on - strandat 587.145 kb on + strandat 587.146 kb on - strandat 587.146 kb on - strandat 587.146 kb on - strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.163 kb on + strandat 587.163 kb on + strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.314 kb on - strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.566 kb on - strand, within AO353_02765

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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585,597 - +0.2
585,597 - -0.8
585,685 + AO353_02750 0.21 +1.3
585,685 + AO353_02750 0.21 -0.8
585,685 + AO353_02750 0.21 +0.2
585,685 + AO353_02750 0.21 +1.3
585,685 + AO353_02750 0.21 +0.8
585,685 + AO353_02750 0.21 -0.2
585,685 + AO353_02750 0.21 -1.2
585,685 + AO353_02750 0.21 -1.5
585,685 + AO353_02750 0.21 +0.4
585,685 + AO353_02750 0.21 +2.5
585,685 + AO353_02750 0.21 -1.0
585,685 + AO353_02750 0.21 +2.4
585,685 + AO353_02750 0.21 +2.5
585,685 + AO353_02750 0.21 -1.5
585,685 + AO353_02750 0.21 +1.8
585,685 + AO353_02750 0.21 -0.2
585,686 - AO353_02750 0.22 -0.4
585,686 - AO353_02750 0.22 -1.2
585,686 - AO353_02750 0.22 -0.5
585,686 - AO353_02750 0.22 -1.7
585,686 - AO353_02750 0.22 +0.2
585,686 - AO353_02750 0.22 +1.8
585,686 - AO353_02750 0.22 +0.8
585,686 - AO353_02750 0.22 -1.4
585,686 - AO353_02750 0.22 +0.6
585,686 - AO353_02750 0.22 +1.8
585,686 - AO353_02750 0.22 +0.8
585,724 + AO353_02750 0.31 -1.5
585,725 - AO353_02750 0.31 +1.8
585,725 - AO353_02750 0.31 +1.2
585,725 - AO353_02750 0.31 -1.5
585,767 - AO353_02750 0.42 -1.2
585,767 - AO353_02750 0.42 -1.0
585,803 - AO353_02750 0.51 -2.1
585,915 - AO353_02750 0.78 -0.5
585,915 - AO353_02750 0.78 +0.4
585,915 - AO353_02750 0.78 +1.0
586,000 + +0.8
586,086 + -1.2
586,087 - -2.3
586,087 - -0.5
586,087 - -1.7
586,087 - -1.7
586,124 - -2.7
586,124 - -1.4
586,299 + AO353_02755 0.21 +3.4
586,299 + AO353_02755 0.21 -0.2
586,299 + AO353_02755 0.21 -0.5
586,299 + AO353_02755 0.21 -1.0
586,299 + AO353_02755 0.21 -0.2
586,299 + AO353_02755 0.21 -1.8
586,299 + AO353_02755 0.21 +0.8
586,299 + AO353_02755 0.21 -1.8
586,299 + AO353_02755 0.21 -0.7
586,299 + AO353_02755 0.21 +1.4
586,299 + AO353_02755 0.21 -1.7
586,299 + AO353_02755 0.21 +3.4
586,299 + AO353_02755 0.21 -1.4
586,299 + AO353_02755 0.21 -0.8
586,299 + AO353_02755 0.21 +1.6
586,299 + AO353_02755 0.21 +1.8
586,300 - AO353_02755 0.22 +2.4
586,300 - AO353_02755 0.22 +1.1
586,300 - AO353_02755 0.22 -0.2
586,300 - AO353_02755 0.22 +1.8
586,300 - AO353_02755 0.22 -0.2
586,300 - AO353_02755 0.22 +1.6
586,300 - AO353_02755 0.22 +0.5
586,300 - AO353_02755 0.22 -1.4
586,300 - AO353_02755 0.22 -1.2
586,300 - AO353_02755 0.22 -0.2
586,300 - AO353_02755 0.22 +0.2
586,300 - AO353_02755 0.22 +0.8
586,300 - AO353_02755 0.22 -0.4
586,300 - AO353_02755 0.22 -2.5
586,300 - AO353_02755 0.22 -2.7
586,300 - AO353_02755 0.22 +2.6
586,300 - AO353_02755 0.22 -3.8
586,300 - AO353_02755 0.22 +1.6
586,300 - AO353_02755 0.22 -0.2
586,300 - AO353_02755 0.22 -1.7
586,300 - AO353_02755 0.22 +1.9
586,300 - AO353_02755 0.22 +0.2
586,300 - AO353_02755 0.22 -0.1
586,300 - AO353_02755 0.22 +0.3
586,510 + AO353_02755 0.66 +0.8
586,511 - AO353_02755 0.67 -0.2
586,511 - AO353_02755 0.67 -0.1
586,527 + AO353_02755 0.70 +1.1
586,527 + AO353_02755 0.70 +0.8
586,527 + AO353_02755 0.70 +0.8
586,527 + AO353_02755 0.70 +1.3
586,528 - AO353_02755 0.70 +1.5
586,531 + AO353_02755 0.71 -1.2
586,531 + AO353_02755 0.71 -1.9
586,531 + AO353_02755 0.71 +2.2
586,531 + AO353_02755 0.71 +1.4
586,531 + AO353_02755 0.71 -1.7
586,531 + AO353_02755 0.71 +3.6
586,532 - AO353_02755 0.71 -0.8
586,532 - AO353_02755 0.71 -1.5
586,532 - AO353_02755 0.71 +2.1
586,532 - AO353_02755 0.71 +1.8
586,532 - AO353_02755 0.71 -1.9
586,569 - AO353_02755 0.79 +0.8
586,596 + AO353_02755 0.85 -0.5
586,596 + AO353_02755 0.85 +0.8
586,597 - AO353_02755 0.85 +1.0
586,597 - AO353_02755 0.85 +0.2
586,678 + -0.5
586,678 + +1.3
586,745 + -1.2
586,745 + -1.7
586,745 + +1.8
586,745 + +0.2
586,745 + -0.5
586,745 + +0.4
586,745 + -1.4
586,746 - +2.2
586,746 - +0.2
586,746 - -0.2
586,746 - -1.0
586,746 - -1.2
586,762 + +0.2
586,762 + +0.8
586,762 + -0.2
586,763 - +2.5
586,802 - -1.5
587,138 + +0.1
587,139 - -0.8
587,139 - +0.7
587,139 - -2.5
587,145 + +0.6
587,146 - +1.8
587,146 - -0.5
587,146 - -1.2
587,160 + -0.8
587,160 + +2.8
587,160 + -0.2
587,160 + +2.0
587,161 - -0.8
587,161 - +0.1
587,161 - -1.2
587,161 - +0.8
587,163 + +2.0
587,163 + +2.4
587,164 - +0.2
587,164 - +2.9
587,164 - +4.2
587,164 - +0.8
587,314 - AO353_02765 0.30 -0.8
587,400 + AO353_02765 0.45 -1.4
587,400 + AO353_02765 0.45 +1.9
587,400 + AO353_02765 0.45 +0.2
587,401 - AO353_02765 0.45 -1.4
587,401 - AO353_02765 0.45 +0.8
587,401 - AO353_02765 0.45 -0.3
587,566 - AO353_02765 0.73 -0.5

Or see this region's nucleotide sequence