Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02255 and AO353_02260 are separated by 101 nucleotides AO353_02260 and AO353_02265 are separated by 180 nucleotides
AO353_02255: AO353_02255 - alpha/beta hydrolase, at 482,204 to 483,172
_02255
AO353_02260: AO353_02260 - hypothetical protein, at 483,274 to 484,065
_02260
AO353_02265: AO353_02265 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 484,246 to 485,154
_02265
Position (kb) 483
484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.281 kb on - strand at 482.281 kb on - strand at 482.414 kb on - strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.612 kb on - strand, within AO353_02255 at 482.725 kb on - strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 483.092 kb on + strand at 483.092 kb on + strand at 483.093 kb on - strand at 483.093 kb on - strand at 483.093 kb on - strand at 483.093 kb on - strand at 483.148 kb on + strand at 483.148 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.171 kb on - strand at 483.171 kb on - strand at 483.182 kb on - strand at 483.645 kb on + strand, within AO353_02260 at 483.645 kb on + strand, within AO353_02260 at 483.645 kb on + strand, within AO353_02260 at 483.646 kb on - strand, within AO353_02260 at 483.646 kb on - strand, within AO353_02260 at 483.646 kb on - strand, within AO353_02260 at 483.673 kb on + strand, within AO353_02260 at 483.673 kb on + strand, within AO353_02260 at 483.674 kb on - strand, within AO353_02260 at 483.674 kb on - strand, within AO353_02260 at 483.775 kb on + strand, within AO353_02260 at 483.776 kb on - strand, within AO353_02260 at 483.776 kb on - strand, within AO353_02260 at 483.815 kb on + strand, within AO353_02260 at 483.816 kb on - strand, within AO353_02260 at 483.816 kb on - strand, within AO353_02260 at 483.964 kb on + strand, within AO353_02260 at 483.964 kb on + strand, within AO353_02260 at 483.965 kb on - strand, within AO353_02260 at 483.965 kb on - strand, within AO353_02260 at 483.986 kb on + strand at 483.986 kb on + strand at 483.986 kb on + strand at 483.987 kb on - strand at 483.987 kb on - strand at 483.987 kb on - strand at 484.054 kb on - strand at 484.054 kb on - strand at 484.064 kb on - strand at 484.167 kb on + strand at 484.183 kb on + strand at 484.183 kb on + strand at 484.183 kb on + strand at 484.183 kb on + strand at 484.184 kb on - strand at 484.184 kb on - strand at 484.184 kb on - strand at 484.247 kb on + strand at 484.247 kb on + strand at 484.248 kb on - strand at 484.359 kb on - strand, within AO353_02265 at 484.509 kb on - strand, within AO353_02265 at 484.547 kb on + strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.619 kb on + strand, within AO353_02265 at 484.619 kb on + strand, within AO353_02265 at 484.721 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.902 kb on - strand, within AO353_02265 at 484.902 kb on - strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 482,280 + +2.2 482,280 + -2.3 482,280 + +0.1 482,280 + +0.8 482,280 + -0.3 482,280 + +0.7 482,280 + +2.1 482,281 - -1.8 482,281 - -1.1 482,414 - AO353_02255 0.22 -0.6 482,561 + AO353_02255 0.37 +0.1 482,561 + AO353_02255 0.37 +0.9 482,561 + AO353_02255 0.37 +0.7 482,561 + AO353_02255 0.37 +1.5 482,561 + AO353_02255 0.37 -1.9 482,561 + AO353_02255 0.37 -0.9 482,562 - AO353_02255 0.37 +2.6 482,562 - AO353_02255 0.37 -1.3 482,562 - AO353_02255 0.37 +2.2 482,612 - AO353_02255 0.42 -1.9 482,725 - AO353_02255 0.54 +1.3 482,876 + AO353_02255 0.69 -0.6 482,876 + AO353_02255 0.69 +2.6 482,876 + AO353_02255 0.69 -0.6 482,876 + AO353_02255 0.69 -2.4 482,876 + AO353_02255 0.69 -2.6 482,876 + AO353_02255 0.69 -1.9 482,876 + AO353_02255 0.69 +3.3 482,876 + AO353_02255 0.69 +3.6 482,876 + AO353_02255 0.69 +0.4 482,876 + AO353_02255 0.69 -2.5 482,877 - AO353_02255 0.69 +2.5 482,877 - AO353_02255 0.69 -1.6 482,877 - AO353_02255 0.69 +1.8 482,877 - AO353_02255 0.69 +0.1 482,877 - AO353_02255 0.69 -0.3 483,092 + -0.9 483,092 + +0.4 483,093 - +0.7 483,093 - -1.0 483,093 - +0.1 483,093 - -1.8 483,148 + +0.3 483,148 + +0.1 483,170 + -0.3 483,170 + -1.1 483,170 + +0.4 483,170 + +1.3 483,170 + +1.8 483,171 - -1.8 483,171 - +1.1 483,182 - +0.9 483,645 + AO353_02260 0.47 +4.1 483,645 + AO353_02260 0.47 +1.0 483,645 + AO353_02260 0.47 -1.1 483,646 - AO353_02260 0.47 -0.4 483,646 - AO353_02260 0.47 +0.9 483,646 - AO353_02260 0.47 +0.7 483,673 + AO353_02260 0.50 -2.2 483,673 + AO353_02260 0.50 +1.6 483,674 - AO353_02260 0.51 +2.2 483,674 - AO353_02260 0.51 +1.9 483,775 + AO353_02260 0.63 -3.1 483,776 - AO353_02260 0.63 -1.3 483,776 - AO353_02260 0.63 +0.1 483,815 + AO353_02260 0.68 -0.6 483,816 - AO353_02260 0.68 -0.3 483,816 - AO353_02260 0.68 -2.4 483,964 + AO353_02260 0.87 +2.9 483,964 + AO353_02260 0.87 -0.2 483,965 - AO353_02260 0.87 -0.9 483,965 - AO353_02260 0.87 -2.6 483,986 + -1.6 483,986 + +0.7 483,986 + +1.2 483,987 - -0.3 483,987 - -1.8 483,987 - +3.1 484,054 - +1.0 484,054 - -2.1 484,064 - -1.5 484,167 + -1.6 484,183 + -0.1 484,183 + -0.3 484,183 + -1.9 484,183 + +1.7 484,184 - -2.3 484,184 - +0.1 484,184 - +2.4 484,247 + +0.2 484,247 + -0.9 484,248 - +1.7 484,359 - AO353_02265 0.12 +0.3 484,509 - AO353_02265 0.29 -1.3 484,547 + AO353_02265 0.33 +0.9 484,548 - AO353_02265 0.33 -0.3 484,548 - AO353_02265 0.33 -0.6 484,548 - AO353_02265 0.33 -0.3 484,548 - AO353_02265 0.33 -2.0 484,619 + AO353_02265 0.41 +0.8 484,619 + AO353_02265 0.41 +0.1 484,721 + AO353_02265 0.52 +0.1 484,846 + AO353_02265 0.66 +3.9 484,846 + AO353_02265 0.66 +1.9 484,846 + AO353_02265 0.66 -1.9 484,847 - AO353_02265 0.66 +0.1 484,847 - AO353_02265 0.66 -0.3 484,847 - AO353_02265 0.66 +0.1 484,901 + AO353_02265 0.72 +2.6 484,901 + AO353_02265 0.72 -1.1 484,901 + AO353_02265 0.72 +1.1 484,901 + AO353_02265 0.72 -0.9 484,902 - AO353_02265 0.72 -0.6 484,902 - AO353_02265 0.72 -2.1 484,988 + AO353_02265 0.82 -0.6 484,988 + AO353_02265 0.82 +3.6 484,988 + AO353_02265 0.82 +0.7 484,988 + AO353_02265 0.82 +0.1 484,988 + AO353_02265 0.82 -0.3 484,989 - AO353_02265 0.82 +1.1 484,989 - AO353_02265 0.82 +3.8 484,989 - AO353_02265 0.82 -0.9 484,989 - AO353_02265 0.82 +0.3 484,989 - AO353_02265 0.82 +2.5 484,989 - AO353_02265 0.82 -0.6 484,989 - AO353_02265 0.82 -2.8 484,989 - AO353_02265 0.82 -0.5 484,989 - AO353_02265 0.82 -1.8 484,989 - AO353_02265 0.82 +0.7 484,989 - AO353_02265 0.82 -0.6 484,989 - AO353_02265 0.82 -0.3 484,989 - AO353_02265 0.82 +2.6
Or see this region's nucleotide sequence