Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02005

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02000 and AO353_02005 overlap by 11 nucleotidesAO353_02005 and AO353_02010 are separated by 32 nucleotides AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641 _02000 AO353_02005: AO353_02005 - hypothetical protein, at 427,631 to 428,440 _02005 AO353_02010: AO353_02010 - glycosyl transferase family 1, at 428,473 to 429,720 _02010 Position (kb) 427 428 429Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 426.749 kb on - strand, within AO353_02000at 426.749 kb on - strand, within AO353_02000at 426.751 kb on - strand, within AO353_02000at 426.868 kb on - strand, within AO353_02000at 426.911 kb on - strand, within AO353_02000at 426.957 kb on - strand, within AO353_02000at 426.961 kb on - strand, within AO353_02000at 426.988 kb on - strand, within AO353_02000at 427.159 kb on - strand, within AO353_02000at 427.503 kb on + strand, within AO353_02000at 427.504 kb on - strand, within AO353_02000at 427.584 kb on - strandat 427.584 kb on - strandat 427.587 kb on + strandat 427.988 kb on + strand, within AO353_02005at 427.989 kb on - strand, within AO353_02005at 428.132 kb on - strand, within AO353_02005at 428.387 kb on - strandat 428.647 kb on + strand, within AO353_02010at 428.647 kb on + strand, within AO353_02010at 428.648 kb on - strand, within AO353_02010at 428.650 kb on + strand, within AO353_02010at 428.650 kb on + strand, within AO353_02010at 428.650 kb on + strand, within AO353_02010at 428.651 kb on - strand, within AO353_02010at 428.651 kb on - strand, within AO353_02010at 428.700 kb on + strand, within AO353_02010at 428.701 kb on - strand, within AO353_02010at 428.776 kb on + strand, within AO353_02010at 428.777 kb on - strand, within AO353_02010at 428.800 kb on - strand, within AO353_02010at 428.800 kb on - strand, within AO353_02010at 428.833 kb on + strand, within AO353_02010at 428.834 kb on - strand, within AO353_02010at 428.834 kb on - strand, within AO353_02010at 428.941 kb on - strand, within AO353_02010at 429.069 kb on + strand, within AO353_02010at 429.071 kb on + strand, within AO353_02010at 429.174 kb on + strand, within AO353_02010at 429.174 kb on + strand, within AO353_02010at 429.198 kb on - strand, within AO353_02010at 429.198 kb on - strand, within AO353_02010at 429.411 kb on + strand, within AO353_02010at 429.411 kb on + strand, within AO353_02010

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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426,749 - AO353_02000 0.31 -1.0
426,749 - AO353_02000 0.31 +4.3
426,751 - AO353_02000 0.31 +2.5
426,868 - AO353_02000 0.40 +3.3
426,911 - AO353_02000 0.43 +0.3
426,957 - AO353_02000 0.47 +0.6
426,961 - AO353_02000 0.47 +6.6
426,988 - AO353_02000 0.49 +0.6
427,159 - AO353_02000 0.63 +4.8
427,503 + AO353_02000 0.89 +0.6
427,504 - AO353_02000 0.89 +1.2
427,584 - +1.6
427,584 - +1.6
427,587 + -1.5
427,988 + AO353_02005 0.44 -2.3
427,989 - AO353_02005 0.44 +3.6
428,132 - AO353_02005 0.62 +4.5
428,387 - +5.5
428,647 + AO353_02010 0.14 +0.6
428,647 + AO353_02010 0.14 +3.7
428,648 - AO353_02010 0.14 -1.4
428,650 + AO353_02010 0.14 +4.4
428,650 + AO353_02010 0.14 -1.2
428,650 + AO353_02010 0.14 -1.4
428,651 - AO353_02010 0.14 +0.1
428,651 - AO353_02010 0.14 -0.7
428,700 + AO353_02010 0.18 +4.2
428,701 - AO353_02010 0.18 +1.4
428,776 + AO353_02010 0.24 -2.6
428,777 - AO353_02010 0.24 -2.1
428,800 - AO353_02010 0.26 +4.9
428,800 - AO353_02010 0.26 +1.6
428,833 + AO353_02010 0.29 -2.3
428,834 - AO353_02010 0.29 +6.0
428,834 - AO353_02010 0.29 -1.2
428,941 - AO353_02010 0.38 +3.2
429,069 + AO353_02010 0.48 -0.7
429,071 + AO353_02010 0.48 +4.6
429,174 + AO353_02010 0.56 -0.9
429,174 + AO353_02010 0.56 +4.4
429,198 - AO353_02010 0.58 +4.3
429,198 - AO353_02010 0.58 -0.9
429,411 + AO353_02010 0.75 -0.7
429,411 + AO353_02010 0.75 -1.4

Or see this region's nucleotide sequence