Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01940

Experiment: Doxycycline hyclate 0.0006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01935 and AO353_01940 overlap by 11 nucleotidesAO353_01940 and AO353_01945 are separated by 187 nucleotides AO353_01935: AO353_01935 - hydroxypyruvate reductase, at 408,976 to 410,256 _01935 AO353_01940: AO353_01940 - pyruvate kinase, at 410,246 to 411,661 _01940 AO353_01945: AO353_01945 - urea transporter, at 411,849 to 412,769 _01945 Position (kb) 410 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 409.485 kb on + strand, within AO353_01935at 409.510 kb on + strand, within AO353_01935at 409.510 kb on + strand, within AO353_01935at 409.510 kb on + strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.516 kb on + strand, within AO353_01935at 409.516 kb on + strand, within AO353_01935at 409.516 kb on + strand, within AO353_01935at 409.517 kb on - strand, within AO353_01935at 409.517 kb on - strand, within AO353_01935at 409.517 kb on - strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.683 kb on - strand, within AO353_01935at 409.683 kb on - strand, within AO353_01935at 409.865 kb on + strand, within AO353_01935at 409.865 kb on + strand, within AO353_01935at 409.866 kb on - strand, within AO353_01935at 409.866 kb on - strand, within AO353_01935at 410.086 kb on + strand, within AO353_01935at 410.087 kb on - strand, within AO353_01935at 410.087 kb on - strand, within AO353_01935at 410.152 kb on + strandat 410.152 kb on + strandat 410.152 kb on + strandat 410.152 kb on + strandat 410.153 kb on - strandat 410.153 kb on - strandat 410.257 kb on + strandat 410.257 kb on + strandat 410.258 kb on - strandat 410.258 kb on - strandat 410.258 kb on - strandat 410.341 kb on + strandat 410.341 kb on + strandat 410.341 kb on + strandat 410.341 kb on + strandat 410.342 kb on - strandat 410.342 kb on - strandat 410.342 kb on - strandat 410.393 kb on + strand, within AO353_01940at 410.393 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.661 kb on - strand, within AO353_01940at 410.799 kb on + strand, within AO353_01940at 410.799 kb on + strand, within AO353_01940at 410.800 kb on - strand, within AO353_01940at 410.800 kb on - strand, within AO353_01940at 411.355 kb on - strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.584 kb on - strandat 411.584 kb on - strandat 411.643 kb on + strandat 411.644 kb on - strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.718 kb on + strandat 411.719 kb on - strandat 411.719 kb on - strandat 411.719 kb on - strandat 411.719 kb on - strandat 411.722 kb on + strandat 411.722 kb on + strandat 411.722 kb on + strandat 411.723 kb on - strandat 411.723 kb on - strandat 411.723 kb on - strandat 411.738 kb on + strandat 411.738 kb on + strandat 411.739 kb on - strandat 411.740 kb on + strandat 411.740 kb on + strandat 411.752 kb on + strandat 411.753 kb on - strandat 411.839 kb on - strandat 411.975 kb on - strand, within AO353_01945at 411.975 kb on - strand, within AO353_01945at 411.975 kb on - strand, within AO353_01945at 412.083 kb on + strand, within AO353_01945at 412.083 kb on + strand, within AO353_01945at 412.083 kb on + strand, within AO353_01945at 412.084 kb on - strand, within AO353_01945at 412.084 kb on - strand, within AO353_01945at 412.233 kb on + strand, within AO353_01945at 412.233 kb on + strand, within AO353_01945at 412.234 kb on - strand, within AO353_01945at 412.297 kb on + strand, within AO353_01945at 412.298 kb on - strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.522 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.596 kb on - strand, within AO353_01945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
remove
409,485 + AO353_01935 0.40 -1.2
409,510 + AO353_01935 0.42 +0.0
409,510 + AO353_01935 0.42 -2.0
409,510 + AO353_01935 0.42 +0.0
409,511 - AO353_01935 0.42 -1.5
409,511 - AO353_01935 0.42 +1.0
409,511 - AO353_01935 0.42 -0.7
409,511 - AO353_01935 0.42 -0.5
409,511 - AO353_01935 0.42 +0.6
409,511 - AO353_01935 0.42 -1.2
409,512 + AO353_01935 0.42 -1.7
409,512 + AO353_01935 0.42 -0.7
409,512 + AO353_01935 0.42 -0.7
409,512 + AO353_01935 0.42 -2.1
409,512 + AO353_01935 0.42 -0.1
409,512 + AO353_01935 0.42 -0.9
409,512 + AO353_01935 0.42 +1.5
409,512 + AO353_01935 0.42 -2.2
409,512 + AO353_01935 0.42 -2.6
409,512 + AO353_01935 0.42 -1.7
409,512 + AO353_01935 0.42 -2.2
409,513 - AO353_01935 0.42 -1.0
409,513 - AO353_01935 0.42 -0.4
409,513 - AO353_01935 0.42 -1.0
409,513 - AO353_01935 0.42 -0.3
409,513 - AO353_01935 0.42 +3.5
409,513 - AO353_01935 0.42 +1.6
409,513 - AO353_01935 0.42 -0.7
409,513 - AO353_01935 0.42 -1.2
409,513 - AO353_01935 0.42 -0.4
409,513 - AO353_01935 0.42 +0.6
409,516 + AO353_01935 0.42 -1.5
409,516 + AO353_01935 0.42 +0.8
409,516 + AO353_01935 0.42 +2.7
409,517 - AO353_01935 0.42 +1.4
409,517 - AO353_01935 0.42 -1.2
409,517 - AO353_01935 0.42 +0.2
409,682 + AO353_01935 0.55 +1.4
409,682 + AO353_01935 0.55 +1.6
409,682 + AO353_01935 0.55 -1.0
409,682 + AO353_01935 0.55 -1.2
409,683 - AO353_01935 0.55 +1.6
409,683 - AO353_01935 0.55 -1.2
409,865 + AO353_01935 0.69 -1.1
409,865 + AO353_01935 0.69 +0.0
409,866 - AO353_01935 0.69 -2.2
409,866 - AO353_01935 0.69 -1.0
410,086 + AO353_01935 0.87 +0.4
410,087 - AO353_01935 0.87 -0.4
410,087 - AO353_01935 0.87 +1.8
410,152 + +2.6
410,152 + -1.5
410,152 + -2.6
410,152 + +0.0
410,153 - -2.8
410,153 - -1.2
410,257 + -1.2
410,257 + +2.5
410,258 - +0.1
410,258 - -2.5
410,258 - -1.0
410,341 + +1.6
410,341 + +1.6
410,341 + +1.9
410,341 + +1.0
410,342 - -1.2
410,342 - +0.6
410,342 - -2.2
410,393 + AO353_01940 0.10 +0.6
410,393 + AO353_01940 0.10 +1.2
410,660 + AO353_01940 0.29 -1.0
410,660 + AO353_01940 0.29 -1.0
410,660 + AO353_01940 0.29 -1.4
410,660 + AO353_01940 0.29 -1.4
410,660 + AO353_01940 0.29 +1.6
410,660 + AO353_01940 0.29 -1.0
410,661 - AO353_01940 0.29 +0.9
410,799 + AO353_01940 0.39 -0.2
410,799 + AO353_01940 0.39 -0.7
410,800 - AO353_01940 0.39 +0.2
410,800 - AO353_01940 0.39 +2.0
411,355 - AO353_01940 0.78 +1.0
411,371 + AO353_01940 0.79 -0.4
411,371 + AO353_01940 0.79 +1.2
411,371 + AO353_01940 0.79 +2.2
411,371 + AO353_01940 0.79 +0.4
411,372 - AO353_01940 0.80 -0.2
411,372 - AO353_01940 0.80 +0.4
411,372 - AO353_01940 0.80 +2.6
411,372 - AO353_01940 0.80 -2.6
411,583 + -1.5
411,583 + +1.1
411,583 + +1.9
411,583 + +1.0
411,583 + +0.9
411,583 + +0.6
411,583 + +0.7
411,584 - -1.7
411,584 - -2.2
411,643 + -0.1
411,644 - +1.0
411,645 + -1.7
411,645 + -1.7
411,645 + +2.8
411,645 + -1.5
411,645 + -0.7
411,645 + +0.8
411,645 + +1.6
411,718 + -1.8
411,719 - -2.7
411,719 - -2.0
411,719 - +2.6
411,719 - -1.4
411,722 + -0.8
411,722 + -1.4
411,722 + -1.7
411,723 - -0.1
411,723 - +0.0
411,723 - -1.2
411,738 + -1.2
411,738 + +2.3
411,739 - +2.7
411,740 + -1.5
411,740 + -2.7
411,752 + -0.4
411,753 - -0.4
411,839 - -1.4
411,975 - AO353_01945 0.14 +1.2
411,975 - AO353_01945 0.14 -1.4
411,975 - AO353_01945 0.14 +0.0
412,083 + AO353_01945 0.25 -0.4
412,083 + AO353_01945 0.25 +0.4
412,083 + AO353_01945 0.25 +2.8
412,084 - AO353_01945 0.26 -0.4
412,084 - AO353_01945 0.26 -1.4
412,233 + AO353_01945 0.42 -1.0
412,233 + AO353_01945 0.42 -0.4
412,234 - AO353_01945 0.42 +1.3
412,297 + AO353_01945 0.49 +0.0
412,298 - AO353_01945 0.49 -0.4
412,521 + AO353_01945 0.73 +2.4
412,521 + AO353_01945 0.73 -1.4
412,521 + AO353_01945 0.73 +0.6
412,521 + AO353_01945 0.73 +2.2
412,522 - AO353_01945 0.73 +0.0
412,528 - AO353_01945 0.74 +1.6
412,528 - AO353_01945 0.74 +1.5
412,528 - AO353_01945 0.74 -1.7
412,528 - AO353_01945 0.74 +1.2
412,596 - AO353_01945 0.81 +3.0

Or see this region's nucleotide sequence