Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01925

Experiment: Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01920 and AO353_01925 are separated by 145 nucleotidesAO353_01925 and AO353_01930 are separated by 108 nucleotides AO353_01920: AO353_01920 - glyoxylate carboligase, at 405,102 to 406,877 _01920 AO353_01925: AO353_01925 - hydroxypyruvate isomerase, at 407,023 to 407,805 _01925 AO353_01930: AO353_01930 - 2-hydroxy-3-oxopropionate reductase, at 407,914 to 408,804 _01930 Position (kb) 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 406.033 kb on + strand, within AO353_01920at 406.227 kb on + strand, within AO353_01920at 406.227 kb on + strand, within AO353_01920at 406.227 kb on + strand, within AO353_01920at 406.227 kb on + strand, within AO353_01920at 406.228 kb on - strand, within AO353_01920at 406.228 kb on - strand, within AO353_01920at 406.228 kb on - strand, within AO353_01920at 406.266 kb on + strand, within AO353_01920at 406.266 kb on + strand, within AO353_01920at 406.266 kb on + strand, within AO353_01920at 406.266 kb on + strand, within AO353_01920at 406.266 kb on + strand, within AO353_01920at 406.267 kb on - strand, within AO353_01920at 406.267 kb on - strand, within AO353_01920at 406.267 kb on - strand, within AO353_01920at 406.267 kb on - strand, within AO353_01920at 406.267 kb on - strand, within AO353_01920at 406.320 kb on + strand, within AO353_01920at 406.321 kb on - strand, within AO353_01920at 406.440 kb on + strand, within AO353_01920at 406.440 kb on + strand, within AO353_01920at 406.440 kb on + strand, within AO353_01920at 406.441 kb on - strand, within AO353_01920at 406.497 kb on + strand, within AO353_01920at 406.497 kb on + strand, within AO353_01920at 406.497 kb on + strand, within AO353_01920at 406.497 kb on + strand, within AO353_01920at 406.497 kb on + strand, within AO353_01920at 406.497 kb on + strand, within AO353_01920at 406.497 kb on + strand, within AO353_01920at 406.498 kb on - strand, within AO353_01920at 406.524 kb on + strand, within AO353_01920at 406.525 kb on - strand, within AO353_01920at 406.525 kb on - strand, within AO353_01920at 406.569 kb on + strand, within AO353_01920at 406.569 kb on + strand, within AO353_01920at 406.569 kb on + strand, within AO353_01920at 406.569 kb on + strand, within AO353_01920at 406.569 kb on + strand, within AO353_01920at 406.570 kb on - strand, within AO353_01920at 406.570 kb on - strand, within AO353_01920at 406.637 kb on - strand, within AO353_01920at 406.875 kb on + strandat 406.876 kb on - strandat 406.876 kb on - strandat 406.895 kb on + strandat 406.896 kb on - strandat 406.896 kb on - strandat 407.002 kb on + strandat 407.122 kb on + strand, within AO353_01925at 407.122 kb on + strand, within AO353_01925at 407.122 kb on + strand, within AO353_01925at 407.122 kb on + strand, within AO353_01925at 407.122 kb on + strand, within AO353_01925at 407.123 kb on - strand, within AO353_01925at 407.123 kb on - strand, within AO353_01925at 407.123 kb on - strand, within AO353_01925at 407.299 kb on + strand, within AO353_01925at 407.299 kb on + strand, within AO353_01925at 407.300 kb on - strand, within AO353_01925at 407.300 kb on - strand, within AO353_01925at 407.300 kb on - strand, within AO353_01925at 407.300 kb on - strand, within AO353_01925at 407.404 kb on + strand, within AO353_01925at 407.404 kb on + strand, within AO353_01925at 407.404 kb on + strand, within AO353_01925at 407.404 kb on + strand, within AO353_01925at 407.404 kb on + strand, within AO353_01925at 407.404 kb on + strand, within AO353_01925at 407.404 kb on + strand, within AO353_01925at 407.405 kb on - strand, within AO353_01925at 407.405 kb on - strand, within AO353_01925at 407.482 kb on + strand, within AO353_01925at 407.482 kb on + strand, within AO353_01925at 407.482 kb on + strand, within AO353_01925at 407.482 kb on + strand, within AO353_01925at 407.482 kb on + strand, within AO353_01925at 407.482 kb on + strand, within AO353_01925at 407.483 kb on - strand, within AO353_01925at 407.483 kb on - strand, within AO353_01925at 407.483 kb on - strand, within AO353_01925at 407.483 kb on - strand, within AO353_01925at 407.551 kb on + strand, within AO353_01925at 407.551 kb on + strand, within AO353_01925at 407.552 kb on - strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.560 kb on + strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.561 kb on - strand, within AO353_01925at 407.683 kb on + strand, within AO353_01925at 407.743 kb on + strandat 407.743 kb on + strandat 407.743 kb on + strandat 407.743 kb on + strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.744 kb on - strandat 407.863 kb on + strandat 407.864 kb on - strandat 407.864 kb on - strandat 407.864 kb on - strandat 407.869 kb on + strandat 407.869 kb on + strandat 407.869 kb on + strandat 407.869 kb on + strandat 407.869 kb on + strandat 407.869 kb on + strandat 407.869 kb on + strandat 407.870 kb on - strandat 407.891 kb on + strandat 407.891 kb on + strandat 407.892 kb on - strandat 407.892 kb on - strandat 407.892 kb on - strandat 407.892 kb on - strandat 407.893 kb on + strandat 407.893 kb on + strandat 407.893 kb on + strandat 407.894 kb on - strandat 407.894 kb on - strandat 407.894 kb on - strandat 407.894 kb on - strandat 407.894 kb on - strandat 407.894 kb on - strandat 407.919 kb on + strandat 407.920 kb on - strandat 408.259 kb on + strand, within AO353_01930at 408.259 kb on + strand, within AO353_01930at 408.259 kb on + strand, within AO353_01930at 408.259 kb on + strand, within AO353_01930at 408.260 kb on - strand, within AO353_01930at 408.260 kb on - strand, within AO353_01930at 408.260 kb on - strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.567 kb on - strand, within AO353_01930at 408.567 kb on - strand, within AO353_01930at 408.567 kb on - strand, within AO353_01930at 408.798 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml
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406,033 + AO353_01920 0.52 +0.6
406,227 + AO353_01920 0.63 +1.3
406,227 + AO353_01920 0.63 -1.7
406,227 + AO353_01920 0.63 +1.8
406,227 + AO353_01920 0.63 -1.9
406,228 - AO353_01920 0.63 -1.6
406,228 - AO353_01920 0.63 +0.4
406,228 - AO353_01920 0.63 -0.7
406,266 + AO353_01920 0.66 -2.0
406,266 + AO353_01920 0.66 -0.6
406,266 + AO353_01920 0.66 -0.2
406,266 + AO353_01920 0.66 +2.4
406,266 + AO353_01920 0.66 -1.4
406,267 - AO353_01920 0.66 -2.1
406,267 - AO353_01920 0.66 -1.0
406,267 - AO353_01920 0.66 -1.8
406,267 - AO353_01920 0.66 +0.1
406,267 - AO353_01920 0.66 -0.6
406,320 + AO353_01920 0.69 +1.2
406,321 - AO353_01920 0.69 -1.8
406,440 + AO353_01920 0.75 +0.0
406,440 + AO353_01920 0.75 -2.2
406,440 + AO353_01920 0.75 -1.0
406,441 - AO353_01920 0.75 +0.6
406,497 + AO353_01920 0.79 -1.7
406,497 + AO353_01920 0.79 -1.2
406,497 + AO353_01920 0.79 -0.7
406,497 + AO353_01920 0.79 +1.6
406,497 + AO353_01920 0.79 -1.0
406,497 + AO353_01920 0.79 +1.3
406,497 + AO353_01920 0.79 +1.6
406,498 - AO353_01920 0.79 -0.7
406,524 + AO353_01920 0.80 -1.0
406,525 - AO353_01920 0.80 +2.1
406,525 - AO353_01920 0.80 -0.4
406,569 + AO353_01920 0.83 +2.7
406,569 + AO353_01920 0.83 +0.6
406,569 + AO353_01920 0.83 -0.7
406,569 + AO353_01920 0.83 +3.4
406,569 + AO353_01920 0.83 -2.3
406,570 - AO353_01920 0.83 -0.4
406,570 - AO353_01920 0.83 +1.1
406,637 - AO353_01920 0.86 -1.0
406,875 + -1.5
406,876 - +1.6
406,876 - -0.7
406,895 + -1.0
406,896 - -1.2
406,896 - -1.8
407,002 + +0.6
407,122 + AO353_01925 0.13 -0.5
407,122 + AO353_01925 0.13 +2.3
407,122 + AO353_01925 0.13 +0.0
407,122 + AO353_01925 0.13 -0.4
407,122 + AO353_01925 0.13 -2.0
407,123 - AO353_01925 0.13 +0.2
407,123 - AO353_01925 0.13 +1.6
407,123 - AO353_01925 0.13 +0.0
407,299 + AO353_01925 0.35 -1.0
407,299 + AO353_01925 0.35 +1.8
407,300 - AO353_01925 0.35 +0.2
407,300 - AO353_01925 0.35 +3.6
407,300 - AO353_01925 0.35 +0.6
407,300 - AO353_01925 0.35 -2.2
407,404 + AO353_01925 0.49 +1.5
407,404 + AO353_01925 0.49 -0.4
407,404 + AO353_01925 0.49 +2.8
407,404 + AO353_01925 0.49 -0.4
407,404 + AO353_01925 0.49 +1.4
407,404 + AO353_01925 0.49 +0.6
407,404 + AO353_01925 0.49 -0.4
407,405 - AO353_01925 0.49 -1.0
407,405 - AO353_01925 0.49 +3.7
407,482 + AO353_01925 0.59 +2.8
407,482 + AO353_01925 0.59 -2.2
407,482 + AO353_01925 0.59 +2.5
407,482 + AO353_01925 0.59 +1.5
407,482 + AO353_01925 0.59 -1.6
407,482 + AO353_01925 0.59 +2.4
407,483 - AO353_01925 0.59 -1.5
407,483 - AO353_01925 0.59 -1.7
407,483 - AO353_01925 0.59 -1.3
407,483 - AO353_01925 0.59 +1.6
407,551 + AO353_01925 0.67 -1.0
407,551 + AO353_01925 0.67 -0.7
407,552 - AO353_01925 0.68 -1.0
407,560 + AO353_01925 0.69 +0.0
407,560 + AO353_01925 0.69 -1.5
407,560 + AO353_01925 0.69 +2.5
407,560 + AO353_01925 0.69 -0.4
407,560 + AO353_01925 0.69 -2.5
407,560 + AO353_01925 0.69 -0.4
407,560 + AO353_01925 0.69 +0.0
407,560 + AO353_01925 0.69 +2.6
407,560 + AO353_01925 0.69 -1.8
407,560 + AO353_01925 0.69 +2.1
407,560 + AO353_01925 0.69 +1.1
407,561 - AO353_01925 0.69 +0.5
407,561 - AO353_01925 0.69 -1.0
407,561 - AO353_01925 0.69 -1.8
407,561 - AO353_01925 0.69 -0.6
407,561 - AO353_01925 0.69 +1.1
407,561 - AO353_01925 0.69 -0.4
407,561 - AO353_01925 0.69 +1.3
407,561 - AO353_01925 0.69 +1.0
407,561 - AO353_01925 0.69 +0.1
407,561 - AO353_01925 0.69 -3.0
407,561 - AO353_01925 0.69 +0.6
407,683 + AO353_01925 0.84 -0.1
407,743 + -0.7
407,743 + +0.5
407,743 + -1.2
407,743 + -0.7
407,744 - +0.3
407,744 - -0.4
407,744 - +0.9
407,744 - +2.0
407,744 - -0.4
407,744 - +0.6
407,744 - +0.0
407,744 - -1.5
407,744 - -1.0
407,863 + -0.7
407,864 - +0.8
407,864 - +0.7
407,864 - -0.1
407,869 + +1.0
407,869 + -1.0
407,869 + +2.3
407,869 + +0.0
407,869 + -0.7
407,869 + +2.1
407,869 + +2.7
407,870 - -2.5
407,891 + -1.0
407,891 + -0.7
407,892 - -1.2
407,892 - -2.0
407,892 - -0.4
407,892 - -0.7
407,893 + -2.1
407,893 + +0.3
407,893 + +3.3
407,894 - -2.7
407,894 - +1.0
407,894 - -2.5
407,894 - -1.0
407,894 - +0.2
407,894 - +0.9
407,919 + -3.3
407,920 - +0.6
408,259 + AO353_01930 0.39 +2.8
408,259 + AO353_01930 0.39 +1.7
408,259 + AO353_01930 0.39 +0.6
408,259 + AO353_01930 0.39 -0.7
408,260 - AO353_01930 0.39 +1.2
408,260 - AO353_01930 0.39 +0.0
408,260 - AO353_01930 0.39 +1.0
408,566 + AO353_01930 0.73 -1.8
408,566 + AO353_01930 0.73 +0.6
408,566 + AO353_01930 0.73 -0.7
408,566 + AO353_01930 0.73 -0.1
408,566 + AO353_01930 0.73 -1.4
408,567 - AO353_01930 0.73 -2.1
408,567 - AO353_01930 0.73 -0.2
408,567 - AO353_01930 0.73 -2.6
408,798 + -0.7
408,802 + -0.6
408,802 + +3.1
408,802 + -1.8
408,802 + +3.0
408,802 + +1.6
408,803 - -0.8
408,803 - -3.1
408,803 - -2.4
408,803 - -1.7
408,803 - +2.2
408,803 - -2.2
408,803 - +0.6
408,803 - +0.9
408,803 - +1.0
408,803 - +2.1
408,803 - -2.5
408,803 - +0.6
408,803 - +1.9

Or see this region's nucleotide sequence