Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01110 and AO353_01115 are separated by 178 nucleotides AO353_01115 and AO353_01120 are separated by 306 nucleotides
AO353_01110: AO353_01110 - inducer of phenazine B, at 243,943 to 246,135
_01110
AO353_01115: AO353_01115 - inducer of phenazine A, at 246,314 to 247,318
_01115
AO353_01120: AO353_01120 - GntR family transcriptional regulator, at 247,625 to 249,073
_01120
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 245.321 kb on - strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.571 kb on + strand, within AO353_01110 at 245.572 kb on - strand, within AO353_01110 at 245.572 kb on - strand, within AO353_01110 at 245.572 kb on - strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.672 kb on - strand, within AO353_01110 at 245.672 kb on - strand, within AO353_01110 at 245.711 kb on + strand, within AO353_01110 at 245.711 kb on + strand, within AO353_01110 at 245.711 kb on + strand, within AO353_01110 at 245.897 kb on + strand, within AO353_01110 at 245.898 kb on - strand, within AO353_01110 at 245.898 kb on - strand, within AO353_01110 at 245.965 kb on - strand at 245.966 kb on + strand at 245.967 kb on - strand at 245.967 kb on - strand at 245.967 kb on - strand at 246.077 kb on + strand at 246.077 kb on + strand at 246.077 kb on + strand at 246.078 kb on - strand at 246.078 kb on - strand at 246.078 kb on - strand at 246.078 kb on - strand at 246.205 kb on + strand at 246.206 kb on - strand at 246.208 kb on + strand at 246.208 kb on + strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.231 kb on + strand at 246.231 kb on + strand at 246.232 kb on - strand at 246.262 kb on + strand at 246.263 kb on - strand at 246.263 kb on - strand at 246.315 kb on + strand at 246.315 kb on + strand at 246.486 kb on + strand, within AO353_01115 at 246.486 kb on + strand, within AO353_01115 at 246.487 kb on - strand, within AO353_01115 at 246.487 kb on - strand, within AO353_01115 at 246.514 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 247.079 kb on + strand, within AO353_01115 at 247.084 kb on + strand, within AO353_01115 at 247.085 kb on - strand, within AO353_01115 at 247.085 kb on - strand, within AO353_01115 at 247.085 kb on - strand, within AO353_01115 at 247.140 kb on + strand, within AO353_01115 at 247.140 kb on + strand, within AO353_01115 at 247.224 kb on + strand at 247.224 kb on + strand at 247.224 kb on + strand at 247.224 kb on + strand at 247.225 kb on - strand at 247.225 kb on - strand at 247.225 kb on - strand at 247.225 kb on - strand at 247.233 kb on + strand at 247.233 kb on + strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.278 kb on + strand at 247.279 kb on - strand at 247.279 kb on - strand at 247.279 kb on - strand at 247.279 kb on - strand at 247.368 kb on + strand at 247.369 kb on - strand at 247.369 kb on - strand at 247.369 kb on - strand at 247.442 kb on + strand at 247.443 kb on - strand at 247.451 kb on + strand at 247.480 kb on + strand at 247.480 kb on + strand at 247.480 kb on + strand at 247.480 kb on + strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.503 kb on + strand at 247.503 kb on + strand at 247.504 kb on - strand at 247.504 kb on - strand at 247.537 kb on - strand at 247.593 kb on + strand at 247.594 kb on - strand at 247.598 kb on + strand at 247.599 kb on - strand at 247.612 kb on + strand at 247.635 kb on - strand at 247.714 kb on + strand at 247.719 kb on + strand at 247.770 kb on + strand, within AO353_01120 at 247.770 kb on + strand, within AO353_01120 at 247.770 kb on + strand, within AO353_01120 at 247.771 kb on - strand, within AO353_01120 at 247.771 kb on - strand, within AO353_01120 at 247.814 kb on + strand, within AO353_01120 at 247.815 kb on - strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.229 kb on - strand, within AO353_01120 at 248.229 kb on - strand, within AO353_01120 at 248.229 kb on - strand, within AO353_01120
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 245,321 - AO353_01110 0.63 +2.8 245,336 + AO353_01110 0.64 +0.1 245,336 + AO353_01110 0.64 -0.9 245,336 + AO353_01110 0.64 +0.1 245,336 + AO353_01110 0.64 +2.3 245,336 + AO353_01110 0.64 +1.1 245,571 + AO353_01110 0.74 +1.6 245,572 - AO353_01110 0.74 -1.4 245,572 - AO353_01110 0.74 +1.6 245,572 - AO353_01110 0.74 +2.6 245,671 + AO353_01110 0.79 +1.8 245,671 + AO353_01110 0.79 -0.9 245,671 + AO353_01110 0.79 +1.6 245,671 + AO353_01110 0.79 +0.5 245,672 - AO353_01110 0.79 +0.3 245,672 - AO353_01110 0.79 -0.4 245,711 + AO353_01110 0.81 -0.4 245,711 + AO353_01110 0.81 -1.4 245,711 + AO353_01110 0.81 +0.1 245,897 + AO353_01110 0.89 +0.3 245,898 - AO353_01110 0.89 +0.5 245,898 - AO353_01110 0.89 -1.4 245,965 - +0.6 245,966 + +1.9 245,967 - -0.5 245,967 - -0.7 245,967 - -0.7 246,077 + +0.6 246,077 + -0.4 246,077 + -0.9 246,078 - -1.2 246,078 - +0.1 246,078 - +2.2 246,078 - +2.1 246,205 + -1.7 246,206 - -0.2 246,208 + -0.1 246,208 + -1.7 246,209 - -1.5 246,209 - +3.6 246,209 - -1.3 246,209 - +1.6 246,209 - +1.6 246,231 + +0.6 246,231 + -0.7 246,232 - -2.2 246,262 + -1.7 246,263 - +0.6 246,263 - +1.3 246,315 + -2.5 246,315 + -2.5 246,486 + AO353_01115 0.17 +2.5 246,486 + AO353_01115 0.17 +0.3 246,487 - AO353_01115 0.17 +0.3 246,487 - AO353_01115 0.17 +1.6 246,514 + AO353_01115 0.20 +2.9 246,522 + AO353_01115 0.21 -0.4 246,522 + AO353_01115 0.21 -0.2 246,522 + AO353_01115 0.21 -3.3 246,522 + AO353_01115 0.21 +1.9 246,522 + AO353_01115 0.21 +1.6 246,522 + AO353_01115 0.21 -1.1 246,522 + AO353_01115 0.21 +0.1 246,522 + AO353_01115 0.21 +1.0 246,522 + AO353_01115 0.21 +0.8 246,522 + AO353_01115 0.21 -0.9 246,522 + AO353_01115 0.21 +0.4 246,522 + AO353_01115 0.21 +0.9 246,523 - AO353_01115 0.21 +2.0 246,523 - AO353_01115 0.21 +1.8 246,523 - AO353_01115 0.21 -1.7 246,523 - AO353_01115 0.21 -0.7 246,523 - AO353_01115 0.21 -0.4 246,523 - AO353_01115 0.21 -0.4 246,523 - AO353_01115 0.21 -0.7 246,523 - AO353_01115 0.21 +2.0 246,523 - AO353_01115 0.21 -0.7 247,079 + AO353_01115 0.76 -1.7 247,084 + AO353_01115 0.77 +0.8 247,085 - AO353_01115 0.77 +3.1 247,085 - AO353_01115 0.77 -1.2 247,085 - AO353_01115 0.77 +1.9 247,140 + AO353_01115 0.82 +1.2 247,140 + AO353_01115 0.82 -1.4 247,224 + -1.2 247,224 + +2.1 247,224 + +2.1 247,224 + -2.1 247,225 - +1.6 247,225 - -0.4 247,225 - +2.0 247,225 - -0.9 247,233 + +0.6 247,233 + -0.4 247,234 - -0.4 247,234 - -1.2 247,234 - -1.5 247,234 - -2.2 247,234 - +3.1 247,278 + +1.6 247,279 - +2.0 247,279 - +0.6 247,279 - +2.1 247,279 - +2.2 247,368 + -0.7 247,369 - +0.1 247,369 - +1.9 247,369 - -1.5 247,442 + +1.0 247,443 - +0.6 247,451 + -0.9 247,480 + -2.4 247,480 + -1.5 247,480 + +1.5 247,480 + -0.7 247,481 - -1.8 247,481 - -1.4 247,481 - +0.6 247,481 - +0.6 247,481 - -1.4 247,481 - -1.4 247,503 + +1.5 247,503 + +0.5 247,504 - -0.7 247,504 - +1.3 247,537 - -1.2 247,593 + +1.3 247,594 - +0.1 247,598 + +0.4 247,599 - -1.8 247,612 + -2.5 247,635 - +0.6 247,714 + -1.4 247,719 + +0.6 247,770 + AO353_01120 0.10 -0.4 247,770 + AO353_01120 0.10 -0.4 247,770 + AO353_01120 0.10 -0.4 247,771 - AO353_01120 0.10 -0.5 247,771 - AO353_01120 0.10 +4.9 247,814 + AO353_01120 0.13 +1.9 247,815 - AO353_01120 0.13 -1.2 248,048 + AO353_01120 0.29 -0.7 248,048 + AO353_01120 0.29 +3.0 248,048 + AO353_01120 0.29 +2.6 248,048 + AO353_01120 0.29 +0.6 248,048 + AO353_01120 0.29 +0.4 248,049 - AO353_01120 0.29 +0.1 248,049 - AO353_01120 0.29 +3.1 248,049 - AO353_01120 0.29 -0.4 248,049 - AO353_01120 0.29 +0.6 248,229 - AO353_01120 0.42 +0.6 248,229 - AO353_01120 0.42 +1.2 248,229 - AO353_01120 0.42 -0.9
Or see this region's nucleotide sequence