Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00085 and AO353_00090 are separated by 996 nucleotides AO353_00090 and AO353_00095 are separated by 58 nucleotides
AO353_00085: AO353_00085 - phospholipase, at 17,530 to 18,240
_00085
AO353_00090: AO353_00090 - hypothetical protein, at 19,237 to 19,452
_00090
AO353_00095: AO353_00095 - hypothetical protein, at 19,511 to 20,884
_00095
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 18.251 kb on + strand at 18.280 kb on + strand at 18.281 kb on - strand at 18.281 kb on - strand at 18.635 kb on + strand at 18.635 kb on + strand at 18.751 kb on + strand at 18.757 kb on + strand at 18.758 kb on - strand at 18.758 kb on - strand at 18.758 kb on - strand at 18.758 kb on - strand at 18.769 kb on + strand at 18.769 kb on + strand at 18.769 kb on + strand at 18.769 kb on + strand at 18.769 kb on + strand at 18.770 kb on - strand at 18.770 kb on - strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.775 kb on + strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.776 kb on - strand at 18.779 kb on + strand at 18.779 kb on + strand at 18.779 kb on + strand at 18.862 kb on + strand at 18.863 kb on - strand at 18.869 kb on + strand at 18.870 kb on - strand at 18.870 kb on - strand at 18.879 kb on + strand at 18.879 kb on + strand at 18.879 kb on + strand at 18.879 kb on + strand at 18.880 kb on - strand at 18.880 kb on - strand at 18.880 kb on - strand at 18.946 kb on + strand at 18.946 kb on + strand at 18.946 kb on + strand at 18.946 kb on + strand at 18.946 kb on + strand at 18.946 kb on + strand at 18.946 kb on + strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.947 kb on - strand at 18.979 kb on + strand at 18.980 kb on - strand at 18.980 kb on - strand at 18.980 kb on - strand at 18.980 kb on - strand at 19.035 kb on - strand at 19.037 kb on + strand at 19.038 kb on - strand at 19.054 kb on + strand at 19.054 kb on + strand at 19.054 kb on + strand at 19.054 kb on + strand at 19.054 kb on + strand at 19.055 kb on - strand at 19.055 kb on - strand at 19.055 kb on - strand at 19.058 kb on + strand at 19.059 kb on - strand at 19.059 kb on - strand at 19.108 kb on + strand at 19.108 kb on + strand at 19.108 kb on + strand at 19.204 kb on + strand at 19.205 kb on - strand at 19.205 kb on - strand at 19.205 kb on - strand at 19.211 kb on + strand at 19.211 kb on + strand at 19.212 kb on - strand at 19.212 kb on - strand at 19.249 kb on + strand at 19.292 kb on + strand, within AO353_00090 at 19.292 kb on + strand, within AO353_00090 at 19.292 kb on + strand, within AO353_00090 at 19.405 kb on + strand, within AO353_00090 at 19.406 kb on - strand, within AO353_00090 at 19.406 kb on - strand, within AO353_00090 at 19.407 kb on + strand, within AO353_00090 at 19.458 kb on - strand at 19.506 kb on - strand at 19.552 kb on - strand at 19.823 kb on - strand, within AO353_00095 at 20.059 kb on + strand, within AO353_00095 at 20.059 kb on + strand, within AO353_00095 at 20.060 kb on - strand, within AO353_00095 at 20.134 kb on + strand, within AO353_00095 at 20.134 kb on + strand, within AO353_00095 at 20.155 kb on - strand, within AO353_00095 at 20.188 kb on - strand, within AO353_00095 at 20.188 kb on - strand, within AO353_00095 at 20.208 kb on + strand, within AO353_00095 at 20.278 kb on + strand, within AO353_00095 at 20.319 kb on + strand, within AO353_00095 at 20.320 kb on - strand, within AO353_00095 at 20.356 kb on + strand, within AO353_00095 at 20.387 kb on - strand, within AO353_00095 at 20.396 kb on + strand, within AO353_00095 at 20.424 kb on + strand, within AO353_00095
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 18,251 + +0.7 18,280 + +0.7 18,281 - +0.3 18,281 - +1.2 18,635 + +0.7 18,635 + -0.3 18,751 + +2.7 18,757 + -1.5 18,758 - -2.1 18,758 - +0.8 18,758 - +1.7 18,758 - -0.3 18,769 + +1.7 18,769 + +1.8 18,769 + -1.3 18,769 + -1.7 18,769 + -2.2 18,770 - +0.7 18,770 - +1.7 18,775 + +0.1 18,775 + +1.7 18,775 + -1.9 18,775 + +0.5 18,775 + +0.4 18,775 + +1.7 18,775 + +3.0 18,775 + -0.9 18,775 + +0.7 18,775 + +3.7 18,775 + +0.1 18,775 + +1.7 18,775 + -0.7 18,775 + -0.3 18,775 + +0.5 18,775 + -0.7 18,775 + -0.3 18,776 - -1.8 18,776 - -2.4 18,776 - +0.7 18,776 - -0.7 18,776 - -0.8 18,776 - +2.8 18,776 - -1.9 18,776 - +3.2 18,776 - +2.5 18,776 - +1.9 18,776 - -2.3 18,776 - +2.2 18,776 - -0.9 18,776 - -0.9 18,776 - -1.1 18,776 - +0.7 18,776 - +0.2 18,776 - +2.0 18,776 - -1.7 18,776 - -0.9 18,776 - -0.7 18,776 - -0.9 18,776 - +0.3 18,776 - +1.2 18,776 - -1.7 18,776 - -1.2 18,779 + -1.8 18,779 + -0.9 18,779 + +4.6 18,862 + -1.5 18,863 - -2.2 18,869 + -2.3 18,870 - -1.2 18,870 - +0.1 18,879 + +2.2 18,879 + +0.1 18,879 + -0.3 18,879 + -1.2 18,880 - +3.2 18,880 - +4.5 18,880 - -1.7 18,946 + +2.1 18,946 + +4.2 18,946 + +0.7 18,946 + +0.8 18,946 + -2.3 18,946 + -1.2 18,946 + +1.1 18,947 - -1.9 18,947 - +2.0 18,947 - +2.0 18,947 - +3.2 18,947 - +1.2 18,947 - +0.7 18,947 - -1.3 18,947 - -0.3 18,947 - -1.5 18,947 - -1.8 18,947 - +0.5 18,979 + -0.3 18,980 - -1.2 18,980 - +0.2 18,980 - -0.7 18,980 - -0.9 19,035 - -2.3 19,037 + +1.1 19,038 - -1.5 19,054 + -0.7 19,054 + +0.2 19,054 + +1.3 19,054 + +0.7 19,054 + -0.7 19,055 - +0.8 19,055 - +0.7 19,055 - -0.9 19,058 + +0.1 19,059 - +3.4 19,059 - -1.2 19,108 + -0.8 19,108 + -1.5 19,108 + -1.3 19,204 + -0.3 19,205 - +3.5 19,205 - -0.7 19,205 - +0.1 19,211 + +3.0 19,211 + -1.3 19,212 - -0.7 19,212 - -0.1 19,249 + +1.1 19,292 + AO353_00090 0.25 -1.8 19,292 + AO353_00090 0.25 -2.4 19,292 + AO353_00090 0.25 -0.3 19,405 + AO353_00090 0.78 -0.7 19,406 - AO353_00090 0.78 -1.5 19,406 - AO353_00090 0.78 +0.1 19,407 + AO353_00090 0.79 -1.5 19,458 - -0.2 19,506 - -0.7 19,552 - -0.3 19,823 - AO353_00095 0.23 -1.5 20,059 + AO353_00095 0.40 +0.7 20,059 + AO353_00095 0.40 -2.8 20,060 - AO353_00095 0.40 -1.5 20,134 + AO353_00095 0.45 +3.8 20,134 + AO353_00095 0.45 +0.1 20,155 - AO353_00095 0.47 +2.0 20,188 - AO353_00095 0.49 +1.7 20,188 - AO353_00095 0.49 +0.7 20,208 + AO353_00095 0.51 +0.7 20,278 + AO353_00095 0.56 -0.9 20,319 + AO353_00095 0.59 -1.5 20,320 - AO353_00095 0.59 -1.5 20,356 + AO353_00095 0.61 +1.1 20,387 - AO353_00095 0.64 -0.2 20,396 + AO353_00095 0.64 -0.9 20,424 + AO353_00095 0.66 -1.2
Or see this region's nucleotide sequence