Experiment: Doxycycline hyclate 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00005 and AO353_00010 are separated by 37 nucleotides
AO353_00005: AO353_00005 - isoprenylcysteine carboxyl methyltransferase, at 379 to 1,038
_00005
AO353_00010: AO353_00010 - hypothetical protein, at 1,076 to 2,173
_00010
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 0.324 kb on - strand at 0.324 kb on - strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.347 kb on + strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.348 kb on - strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.349 kb on + strand at 0.350 kb on - strand at 0.351 kb on + strand at 0.351 kb on + strand at 0.351 kb on + strand at 0.351 kb on + strand at 0.351 kb on + strand at 0.352 kb on - strand at 0.352 kb on - strand at 0.352 kb on - strand at 0.352 kb on - strand at 0.352 kb on - strand at 0.430 kb on + strand at 0.430 kb on + strand at 0.430 kb on + strand at 0.430 kb on + strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.566 kb on + strand, within AO353_00005 at 0.602 kb on + strand, within AO353_00005 at 0.603 kb on - strand, within AO353_00005 at 0.603 kb on - strand, within AO353_00005 at 0.643 kb on + strand, within AO353_00005 at 0.686 kb on + strand, within AO353_00005 at 0.686 kb on + strand, within AO353_00005 at 0.686 kb on + strand, within AO353_00005 at 0.686 kb on + strand, within AO353_00005 at 0.686 kb on + strand, within AO353_00005 at 0.687 kb on - strand, within AO353_00005 at 0.687 kb on - strand, within AO353_00005 at 0.687 kb on - strand, within AO353_00005 at 0.687 kb on - strand, within AO353_00005 at 0.707 kb on + strand, within AO353_00005 at 0.707 kb on + strand, within AO353_00005 at 0.708 kb on - strand, within AO353_00005 at 0.708 kb on - strand, within AO353_00005 at 0.750 kb on - strand, within AO353_00005 at 0.795 kb on + strand, within AO353_00005 at 0.795 kb on + strand, within AO353_00005 at 0.795 kb on + strand, within AO353_00005 at 0.796 kb on - strand, within AO353_00005 at 0.796 kb on - strand, within AO353_00005 at 0.813 kb on + strand, within AO353_00005 at 0.817 kb on + strand, within AO353_00005 at 0.818 kb on - strand, within AO353_00005 at 0.842 kb on - strand, within AO353_00005 at 0.851 kb on + strand, within AO353_00005 at 0.851 kb on + strand, within AO353_00005 at 0.852 kb on - strand, within AO353_00005 at 0.945 kb on - strand, within AO353_00005 at 0.989 kb on - strand at 0.997 kb on + strand at 0.997 kb on + strand at 0.997 kb on + strand at 0.997 kb on + strand at 0.997 kb on + strand at 0.998 kb on - strand at 0.998 kb on - strand at 0.998 kb on - strand at 0.998 kb on - strand at 1.033 kb on + strand at 1.033 kb on + strand at 1.071 kb on + strand at 1.071 kb on + strand at 1.071 kb on + strand at 1.072 kb on - strand at 1.072 kb on - strand at 1.072 kb on - strand at 1.078 kb on - strand at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.249 kb on + strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.250 kb on - strand, within AO353_00010 at 1.251 kb on + strand, within AO353_00010 at 1.251 kb on + strand, within AO353_00010 at 1.251 kb on + strand, within AO353_00010 at 1.251 kb on + strand, within AO353_00010 at 1.251 kb on + strand, within AO353_00010 at 1.252 kb on - strand, within AO353_00010 at 1.252 kb on - strand, within AO353_00010 at 1.252 kb on - strand, within AO353_00010 at 1.252 kb on - strand, within AO353_00010 at 1.253 kb on + strand, within AO353_00010 at 1.253 kb on + strand, within AO353_00010 at 1.253 kb on + strand, within AO353_00010 at 1.253 kb on + strand, within AO353_00010 at 1.253 kb on + strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.254 kb on - strand, within AO353_00010 at 1.312 kb on + strand, within AO353_00010 at 1.312 kb on + strand, within AO353_00010 at 1.312 kb on + strand, within AO353_00010 at 1.313 kb on - strand, within AO353_00010 at 1.497 kb on + strand, within AO353_00010 at 1.498 kb on - strand, within AO353_00010 at 1.512 kb on + strand, within AO353_00010 at 1.512 kb on + strand, within AO353_00010 at 1.513 kb on - strand, within AO353_00010 at 1.513 kb on - strand, within AO353_00010 at 1.513 kb on - strand, within AO353_00010 at 1.540 kb on + strand, within AO353_00010 at 1.541 kb on - strand, within AO353_00010 at 1.541 kb on - strand, within AO353_00010 at 1.541 kb on - strand, within AO353_00010 at 1.541 kb on - strand, within AO353_00010 at 1.551 kb on + strand, within AO353_00010 at 1.551 kb on + strand, within AO353_00010 at 1.551 kb on + strand, within AO353_00010 at 1.551 kb on + strand, within AO353_00010 at 1.551 kb on + strand, within AO353_00010 at 1.552 kb on - strand, within AO353_00010 at 1.552 kb on - strand, within AO353_00010 at 1.552 kb on - strand, within AO353_00010 at 1.552 kb on - strand, within AO353_00010 at 1.552 kb on - strand, within AO353_00010 at 1.552 kb on - strand, within AO353_00010 at 1.612 kb on - strand, within AO353_00010 at 1.666 kb on + strand, within AO353_00010 at 1.666 kb on + strand, within AO353_00010 at 1.688 kb on - strand, within AO353_00010 at 1.688 kb on - strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.001 kb on + strand, within AO353_00010 at 2.002 kb on - strand, within AO353_00010 at 2.002 kb on - strand, within AO353_00010 at 2.002 kb on - strand, within AO353_00010 at 2.002 kb on - strand, within AO353_00010 at 2.002 kb on - strand, within AO353_00010
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0006 mg/ml remove 324 - +3.2 324 - -1.3 347 + -0.9 347 + +2.1 347 + -0.7 347 + -1.7 347 + -1.0 347 + +3.0 347 + +0.3 347 + +2.4 347 + -0.7 347 + +1.7 347 + -0.8 347 + -1.2 347 + -1.7 347 + -0.7 347 + +0.7 347 + -1.8 347 + +2.1 347 + +1.7 347 + +0.1 347 + -1.2 347 + -0.5 348 - +1.2 348 - +1.7 348 - -0.3 348 - +0.1 348 - +2.0 348 - -1.3 348 - +0.1 348 - -0.9 348 - -1.2 348 - -2.1 348 - -0.2 348 - +0.7 348 - +0.1 348 - -1.7 349 + +0.1 349 + -1.2 349 + -0.1 349 + -1.5 349 + -1.8 349 + +2.7 349 + -0.2 349 + -0.2 349 + +1.7 349 + -0.9 349 + +2.2 349 + +1.6 349 + +1.0 349 + +0.1 350 - -0.9 351 + -0.7 351 + -1.5 351 + -1.9 351 + +0.2 351 + +1.7 352 - -1.5 352 - -1.5 352 - +1.9 352 - -0.3 352 - +1.7 430 + +0.2 430 + -0.2 430 + +2.9 430 + +1.7 431 - +0.5 431 - +0.7 566 + AO353_00005 0.28 -1.3 602 + AO353_00005 0.34 -0.3 603 - AO353_00005 0.34 -0.7 603 - AO353_00005 0.34 -0.9 643 + AO353_00005 0.40 +1.7 686 + AO353_00005 0.47 +0.7 686 + AO353_00005 0.47 +0.1 686 + AO353_00005 0.47 -1.2 686 + AO353_00005 0.47 +0.1 686 + AO353_00005 0.47 -2.3 687 - AO353_00005 0.47 -1.9 687 - AO353_00005 0.47 -0.9 687 - AO353_00005 0.47 +0.9 687 - AO353_00005 0.47 +0.7 707 + AO353_00005 0.50 +1.8 707 + AO353_00005 0.50 +0.4 708 - AO353_00005 0.50 +2.2 708 - AO353_00005 0.50 +1.1 750 - AO353_00005 0.56 +2.8 795 + AO353_00005 0.63 +0.7 795 + AO353_00005 0.63 +0.7 795 + AO353_00005 0.63 +1.7 796 - AO353_00005 0.63 -0.3 796 - AO353_00005 0.63 -1.2 813 + AO353_00005 0.66 -1.2 817 + AO353_00005 0.66 +0.1 818 - AO353_00005 0.67 +1.4 842 - AO353_00005 0.70 +0.2 851 + AO353_00005 0.72 +0.1 851 + AO353_00005 0.72 +0.1 852 - AO353_00005 0.72 +2.1 945 - AO353_00005 0.86 +1.3 989 - -0.9 997 + -1.2 997 + +1.7 997 + -0.3 997 + -0.5 997 + -0.7 998 - -0.9 998 - +2.2 998 - +0.1 998 - +1.4 1,033 + +1.4 1,033 + -1.9 1,071 + +0.9 1,071 + +0.1 1,071 + -0.3 1,072 - +0.6 1,072 - +1.7 1,072 - -1.2 1,078 - -0.7 1,249 + AO353_00010 0.16 -1.9 1,249 + AO353_00010 0.16 +0.9 1,249 + AO353_00010 0.16 -1.8 1,249 + AO353_00010 0.16 +2.7 1,249 + AO353_00010 0.16 +0.7 1,249 + AO353_00010 0.16 +1.7 1,249 + AO353_00010 0.16 -0.3 1,249 + AO353_00010 0.16 -1.9 1,249 + AO353_00010 0.16 +3.2 1,249 + AO353_00010 0.16 +1.2 1,249 + AO353_00010 0.16 -0.9 1,249 + AO353_00010 0.16 +0.7 1,249 + AO353_00010 0.16 +1.5 1,249 + AO353_00010 0.16 -0.9 1,249 + AO353_00010 0.16 -2.2 1,249 + AO353_00010 0.16 +0.3 1,249 + AO353_00010 0.16 -2.3 1,249 + AO353_00010 0.16 +0.1 1,249 + AO353_00010 0.16 -1.3 1,249 + AO353_00010 0.16 -0.7 1,249 + AO353_00010 0.16 -0.7 1,249 + AO353_00010 0.16 -1.2 1,249 + AO353_00010 0.16 -0.7 1,250 - AO353_00010 0.16 -1.3 1,250 - AO353_00010 0.16 +2.8 1,250 - AO353_00010 0.16 +2.5 1,250 - AO353_00010 0.16 -0.9 1,250 - AO353_00010 0.16 +2.8 1,250 - AO353_00010 0.16 -1.3 1,250 - AO353_00010 0.16 -1.2 1,250 - AO353_00010 0.16 +1.7 1,250 - AO353_00010 0.16 +0.1 1,250 - AO353_00010 0.16 -0.6 1,250 - AO353_00010 0.16 +2.4 1,250 - AO353_00010 0.16 -0.9 1,250 - AO353_00010 0.16 +0.1 1,250 - AO353_00010 0.16 -0.9 1,250 - AO353_00010 0.16 -0.3 1,250 - AO353_00010 0.16 -0.3 1,250 - AO353_00010 0.16 +0.7 1,250 - AO353_00010 0.16 -1.7 1,250 - AO353_00010 0.16 -0.7 1,250 - AO353_00010 0.16 -0.4 1,250 - AO353_00010 0.16 -0.7 1,250 - AO353_00010 0.16 -0.9 1,250 - AO353_00010 0.16 +4.4 1,251 + AO353_00010 0.16 -1.2 1,251 + AO353_00010 0.16 -1.7 1,251 + AO353_00010 0.16 +0.1 1,251 + AO353_00010 0.16 -0.7 1,251 + AO353_00010 0.16 -1.5 1,252 - AO353_00010 0.16 +1.2 1,252 - AO353_00010 0.16 +1.5 1,252 - AO353_00010 0.16 -0.9 1,252 - AO353_00010 0.16 -0.3 1,253 + AO353_00010 0.16 +0.6 1,253 + AO353_00010 0.16 -0.3 1,253 + AO353_00010 0.16 +4.2 1,253 + AO353_00010 0.16 +1.5 1,253 + AO353_00010 0.16 -0.7 1,254 - AO353_00010 0.16 -2.1 1,254 - AO353_00010 0.16 +1.1 1,254 - AO353_00010 0.16 -0.7 1,254 - AO353_00010 0.16 -1.0 1,254 - AO353_00010 0.16 +4.2 1,254 - AO353_00010 0.16 +0.9 1,254 - AO353_00010 0.16 +3.0 1,254 - AO353_00010 0.16 -0.7 1,254 - AO353_00010 0.16 -2.2 1,312 + AO353_00010 0.21 -1.5 1,312 + AO353_00010 0.21 +0.1 1,312 + AO353_00010 0.21 -1.2 1,313 - AO353_00010 0.22 -0.7 1,497 + AO353_00010 0.38 -0.7 1,498 - AO353_00010 0.38 -1.3 1,512 + AO353_00010 0.40 +1.9 1,512 + AO353_00010 0.40 -1.2 1,513 - AO353_00010 0.40 +2.4 1,513 - AO353_00010 0.40 +0.2 1,513 - AO353_00010 0.40 -0.9 1,540 + AO353_00010 0.42 +0.3 1,541 - AO353_00010 0.42 +1.7 1,541 - AO353_00010 0.42 -1.3 1,541 - AO353_00010 0.42 +2.9 1,541 - AO353_00010 0.42 -0.7 1,551 + AO353_00010 0.43 -1.7 1,551 + AO353_00010 0.43 +3.7 1,551 + AO353_00010 0.43 -2.1 1,551 + AO353_00010 0.43 -1.2 1,551 + AO353_00010 0.43 -0.7 1,552 - AO353_00010 0.43 -1.7 1,552 - AO353_00010 0.43 -1.5 1,552 - AO353_00010 0.43 +1.7 1,552 - AO353_00010 0.43 -1.7 1,552 - AO353_00010 0.43 +1.7 1,552 - AO353_00010 0.43 +2.0 1,612 - AO353_00010 0.49 -0.7 1,666 + AO353_00010 0.54 -0.7 1,666 + AO353_00010 0.54 +0.2 1,688 - AO353_00010 0.56 +5.1 1,688 - AO353_00010 0.56 -0.2 2,001 + AO353_00010 0.84 -1.3 2,001 + AO353_00010 0.84 +1.2 2,001 + AO353_00010 0.84 +2.7 2,001 + AO353_00010 0.84 -2.6 2,001 + AO353_00010 0.84 -0.7 2,001 + AO353_00010 0.84 +2.0 2,001 + AO353_00010 0.84 -2.2 2,001 + AO353_00010 0.84 -0.3 2,001 + AO353_00010 0.84 +1.9 2,001 + AO353_00010 0.84 +0.4 2,001 + AO353_00010 0.84 +1.7 2,001 + AO353_00010 0.84 -1.8 2,002 - AO353_00010 0.84 +2.0 2,002 - AO353_00010 0.84 -1.2 2,002 - AO353_00010 0.84 +0.9 2,002 - AO353_00010 0.84 +0.7 2,002 - AO353_00010 0.84 +3.2
Or see this region's nucleotide sequence