Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4066 and Shewana3_4067 overlap by 4 nucleotides Shewana3_4067 and Shewana3_4068 are separated by 42 nucleotides Shewana3_4068 and Shewana3_4069 are separated by 101 nucleotides
Shewana3_4066: Shewana3_4066 - CzcA family heavy metal efflux protein (RefSeq), at 4,885,090 to 4,888,143
_4066
Shewana3_4067: Shewana3_4067 - hypothetical protein (RefSeq), at 4,888,140 to 4,888,445
_4067
Shewana3_4068: Shewana3_4068 - hypothetical protein (RefSeq), at 4,888,488 to 4,889,123
_4068
Shewana3_4069: Shewana3_4069 - metal dependent phosphohydrolase (RefSeq), at 4,889,225 to 4,890,415
_4069
Position (kb) 4888
4889
4890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4887.488 kb on + strand, within Shewana3_4066 at 4887.705 kb on - strand, within Shewana3_4066 at 4887.824 kb on + strand, within Shewana3_4066 at 4887.861 kb on + strand at 4888.231 kb on + strand, within Shewana3_4067 at 4888.231 kb on + strand, within Shewana3_4067 at 4888.231 kb on + strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.261 kb on + strand, within Shewana3_4067 at 4888.296 kb on + strand, within Shewana3_4067 at 4888.303 kb on - strand, within Shewana3_4067 at 4888.347 kb on - strand, within Shewana3_4067 at 4888.369 kb on - strand, within Shewana3_4067 at 4888.394 kb on + strand, within Shewana3_4067 at 4888.591 kb on - strand, within Shewana3_4068 at 4888.766 kb on - strand, within Shewana3_4068 at 4888.961 kb on + strand, within Shewana3_4068 at 4889.076 kb on - strand at 4889.236 kb on - strand at 4889.480 kb on + strand, within Shewana3_4069 at 4889.488 kb on - strand, within Shewana3_4069 at 4889.548 kb on + strand, within Shewana3_4069 at 4889.612 kb on - strand, within Shewana3_4069 at 4889.646 kb on - strand, within Shewana3_4069 at 4889.651 kb on - strand, within Shewana3_4069 at 4889.655 kb on - strand, within Shewana3_4069 at 4889.778 kb on - strand, within Shewana3_4069 at 4889.803 kb on - strand, within Shewana3_4069 at 4889.822 kb on - strand, within Shewana3_4069 at 4889.824 kb on + strand, within Shewana3_4069 at 4889.861 kb on + strand, within Shewana3_4069 at 4889.880 kb on + strand, within Shewana3_4069 at 4889.880 kb on + strand, within Shewana3_4069 at 4889.880 kb on + strand, within Shewana3_4069 at 4889.888 kb on + strand, within Shewana3_4069 at 4889.893 kb on + strand, within Shewana3_4069 at 4889.962 kb on + strand, within Shewana3_4069 at 4889.981 kb on - strand, within Shewana3_4069 at 4889.998 kb on + strand, within Shewana3_4069 at 4890.035 kb on - strand, within Shewana3_4069
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 4,887,488 + Shewana3_4066 0.79 -0.6 4,887,705 - Shewana3_4066 0.86 -0.9 4,887,824 + Shewana3_4066 0.90 -0.3 4,887,861 + -0.4 4,888,231 + Shewana3_4067 0.30 -0.3 4,888,231 + Shewana3_4067 0.30 +0.5 4,888,231 + Shewana3_4067 0.30 -0.2 4,888,239 - Shewana3_4067 0.32 +0.0 4,888,239 - Shewana3_4067 0.32 -0.8 4,888,239 - Shewana3_4067 0.32 +0.7 4,888,261 + Shewana3_4067 0.40 -0.1 4,888,296 + Shewana3_4067 0.51 -0.7 4,888,303 - Shewana3_4067 0.53 +0.1 4,888,347 - Shewana3_4067 0.68 +0.3 4,888,369 - Shewana3_4067 0.75 -0.4 4,888,394 + Shewana3_4067 0.83 +0.2 4,888,591 - Shewana3_4068 0.16 +0.0 4,888,766 - Shewana3_4068 0.44 +0.3 4,888,961 + Shewana3_4068 0.74 -0.2 4,889,076 - +0.0 4,889,236 - +0.7 4,889,480 + Shewana3_4069 0.21 +1.1 4,889,488 - Shewana3_4069 0.22 -0.1 4,889,548 + Shewana3_4069 0.27 +1.7 4,889,612 - Shewana3_4069 0.32 +0.0 4,889,646 - Shewana3_4069 0.35 -0.2 4,889,651 - Shewana3_4069 0.36 +1.0 4,889,655 - Shewana3_4069 0.36 +0.5 4,889,778 - Shewana3_4069 0.46 +0.6 4,889,803 - Shewana3_4069 0.49 +0.8 4,889,822 - Shewana3_4069 0.50 +0.4 4,889,824 + Shewana3_4069 0.50 +2.3 4,889,861 + Shewana3_4069 0.53 -0.5 4,889,880 + Shewana3_4069 0.55 -2.4 4,889,880 + Shewana3_4069 0.55 -0.0 4,889,880 + Shewana3_4069 0.55 +1.4 4,889,888 + Shewana3_4069 0.56 -0.0 4,889,893 + Shewana3_4069 0.56 +2.7 4,889,962 + Shewana3_4069 0.62 +0.9 4,889,981 - Shewana3_4069 0.63 +0.9 4,889,998 + Shewana3_4069 0.65 +1.0 4,890,035 - Shewana3_4069 0.68 +0.8
Or see this region's nucleotide sequence