Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3156 and Shewana3_3157 are separated by 152 nucleotides Shewana3_3157 and Shewana3_3158 are separated by 50 nucleotides Shewana3_3158 and Shewana3_3159 are separated by 156 nucleotides
Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212
_3156
Shewana3_3157: Shewana3_3157 - diguanylate cyclase with GAF sensor (RefSeq), at 3,786,365 to 3,787,627
_3157
Shewana3_3158: Shewana3_3158 - hypothetical protein (RefSeq), at 3,787,678 to 3,788,295
_3158
Shewana3_3159: Shewana3_3159 - hypothetical protein (RefSeq), at 3,788,452 to 3,788,913
_3159
Position (kb)
3786
3787
3788 Strain fitness (log2 ratio)
-1
0
1 at 3785.677 kb on + strand, within Shewana3_3156 at 3785.797 kb on - strand, within Shewana3_3156 at 3785.880 kb on - strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.601 kb on - strand, within Shewana3_3157 at 3786.694 kb on - strand, within Shewana3_3157 at 3786.699 kb on - strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.764 kb on - strand, within Shewana3_3157 at 3786.924 kb on - strand, within Shewana3_3157 at 3786.969 kb on + strand, within Shewana3_3157 at 3787.093 kb on + strand, within Shewana3_3157 at 3787.404 kb on + strand, within Shewana3_3157 at 3787.655 kb on - strand at 3787.738 kb on - strand at 3787.748 kb on - strand, within Shewana3_3158 at 3788.000 kb on + strand, within Shewana3_3158 at 3788.008 kb on - strand, within Shewana3_3158 at 3788.008 kb on - strand, within Shewana3_3158 at 3788.010 kb on + strand, within Shewana3_3158 at 3788.018 kb on - strand, within Shewana3_3158 at 3788.081 kb on + strand, within Shewana3_3158 at 3788.089 kb on - strand, within Shewana3_3158 at 3788.342 kb on + strand at 3788.342 kb on + strand at 3788.342 kb on + strand at 3788.350 kb on - strand at 3788.350 kb on - strand at 3788.350 kb on - strand at 3788.350 kb on - strand at 3788.356 kb on - strand at 3788.545 kb on + strand, within Shewana3_3159
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 3,785,677 + Shewana3_3156 0.51 +0.1 3,785,797 - Shewana3_3156 0.62 +0.7 3,785,880 - Shewana3_3156 0.70 +0.2 3,786,019 + Shewana3_3156 0.82 -0.1 3,786,019 + Shewana3_3156 0.82 -0.0 3,786,027 - Shewana3_3156 0.83 +0.6 3,786,027 - Shewana3_3156 0.83 +0.7 3,786,601 - Shewana3_3157 0.19 -0.3 3,786,694 - Shewana3_3157 0.26 -0.3 3,786,699 - Shewana3_3157 0.26 +0.7 3,786,756 + Shewana3_3157 0.31 -0.6 3,786,756 + Shewana3_3157 0.31 -1.3 3,786,764 - Shewana3_3157 0.32 -0.3 3,786,924 - Shewana3_3157 0.44 -0.3 3,786,969 + Shewana3_3157 0.48 +0.1 3,787,093 + Shewana3_3157 0.58 +0.7 3,787,404 + Shewana3_3157 0.82 +0.4 3,787,655 - +0.7 3,787,738 - +0.6 3,787,748 - Shewana3_3158 0.11 -0.2 3,788,000 + Shewana3_3158 0.52 -1.3 3,788,008 - Shewana3_3158 0.53 -0.4 3,788,008 - Shewana3_3158 0.53 +0.3 3,788,010 + Shewana3_3158 0.54 -0.4 3,788,018 - Shewana3_3158 0.55 -1.6 3,788,081 + Shewana3_3158 0.65 +0.0 3,788,089 - Shewana3_3158 0.67 +0.4 3,788,342 + -0.5 3,788,342 + +0.1 3,788,342 + +0.4 3,788,350 - -0.4 3,788,350 - -1.0 3,788,350 - -0.3 3,788,350 - +1.1 3,788,356 - -0.4 3,788,545 + Shewana3_3159 0.20 +0.7
Or see this region's nucleotide sequence