Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2845 and Shewana3_2846 are separated by 608 nucleotides Shewana3_2846 and Shewana3_2847 are separated by 177 nucleotides Shewana3_2847 and Shewana3_2848 are separated by 154 nucleotides
Shewana3_2845: Shewana3_2845 - hypothetical protein (RefSeq), at 3,405,443 to 3,405,871
_2845
Shewana3_2846: Shewana3_2846 - IS4 family transposase (RefSeq), at 3,406,480 to 3,408,093
_2846
Shewana3_2847: Shewana3_2847 - hypothetical protein (RefSeq), at 3,408,271 to 3,408,465
_2847
Shewana3_2848: Shewana3_2848 - hypothetical protein (RefSeq), at 3,408,620 to 3,410,317
_2848
Position (kb)
3406
3407
3408
3409 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3405.522 kb on + strand, within Shewana3_2845 at 3405.830 kb on - strand at 3405.879 kb on + strand at 3405.887 kb on - strand at 3406.231 kb on + strand at 3406.240 kb on - strand at 3406.308 kb on - strand at 3406.308 kb on - strand at 3408.221 kb on + strand at 3408.227 kb on + strand at 3408.235 kb on - strand at 3408.320 kb on + strand, within Shewana3_2847 at 3408.320 kb on + strand, within Shewana3_2847 at 3408.328 kb on - strand, within Shewana3_2847 at 3408.328 kb on - strand, within Shewana3_2847 at 3408.345 kb on + strand, within Shewana3_2847 at 3408.481 kb on + strand at 3408.538 kb on + strand at 3408.655 kb on + strand at 3409.025 kb on - strand, within Shewana3_2848 at 3409.062 kb on + strand, within Shewana3_2848
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 3,405,522 + Shewana3_2845 0.18 +1.9 3,405,830 - +0.7 3,405,879 + +1.0 3,405,887 - +1.1 3,406,231 + -1.6 3,406,240 - -1.9 3,406,308 - -0.3 3,406,308 - +0.7 3,408,221 + -0.5 3,408,227 + +0.6 3,408,235 - +1.3 3,408,320 + Shewana3_2847 0.25 -1.1 3,408,320 + Shewana3_2847 0.25 +0.6 3,408,328 - Shewana3_2847 0.29 -0.3 3,408,328 - Shewana3_2847 0.29 -0.8 3,408,345 + Shewana3_2847 0.38 +0.2 3,408,481 + -0.4 3,408,538 + -0.3 3,408,655 + -0.3 3,409,025 - Shewana3_2848 0.24 -0.3 3,409,062 + Shewana3_2848 0.26 -0.9
Or see this region's nucleotide sequence