Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2796 and Shewana3_2797 are separated by 265 nucleotides Shewana3_2797 and Shewana3_2798 are separated by 170 nucleotides
Shewana3_2796: Shewana3_2796 - hypothetical protein (RefSeq), at 3,337,536 to 3,339,359
_2796
Shewana3_2797: Shewana3_2797 - potassium efflux system protein (RefSeq), at 3,339,625 to 3,341,571
_2797
Shewana3_2798: Shewana3_2798 - diguanylate cyclase (RefSeq), at 3,341,742 to 3,342,632
_2798
Position (kb)
3339
3340
3341
3342 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3338.987 kb on + strand, within Shewana3_2796 at 3339.119 kb on - strand, within Shewana3_2796 at 3339.152 kb on - strand, within Shewana3_2796 at 3339.195 kb on + strand at 3339.340 kb on - strand at 3339.380 kb on + strand at 3339.466 kb on + strand at 3339.534 kb on + strand at 3339.607 kb on + strand at 3339.627 kb on + strand at 3339.638 kb on + strand at 3339.856 kb on + strand, within Shewana3_2797 at 3340.118 kb on - strand, within Shewana3_2797 at 3340.442 kb on - strand, within Shewana3_2797 at 3340.502 kb on + strand, within Shewana3_2797 at 3340.505 kb on - strand, within Shewana3_2797 at 3340.510 kb on - strand, within Shewana3_2797 at 3340.582 kb on + strand, within Shewana3_2797 at 3341.164 kb on - strand, within Shewana3_2797 at 3341.254 kb on + strand, within Shewana3_2797 at 3341.289 kb on + strand, within Shewana3_2797 at 3341.374 kb on + strand, within Shewana3_2797 at 3341.429 kb on - strand at 3341.530 kb on + strand at 3341.623 kb on + strand at 3341.745 kb on + strand at 3341.885 kb on - strand, within Shewana3_2798 at 3341.918 kb on + strand, within Shewana3_2798 at 3342.055 kb on - strand, within Shewana3_2798 at 3342.055 kb on - strand, within Shewana3_2798 at 3342.371 kb on - strand, within Shewana3_2798
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 3,338,987 + Shewana3_2796 0.80 -0.1 3,339,119 - Shewana3_2796 0.87 -0.6 3,339,152 - Shewana3_2796 0.89 +0.7 3,339,195 + +0.7 3,339,340 - -0.9 3,339,380 + +0.7 3,339,466 + +0.3 3,339,534 + +0.7 3,339,607 + -0.6 3,339,627 + -0.7 3,339,638 + -1.6 3,339,856 + Shewana3_2797 0.12 +0.7 3,340,118 - Shewana3_2797 0.25 -0.2 3,340,442 - Shewana3_2797 0.42 -1.3 3,340,502 + Shewana3_2797 0.45 +0.7 3,340,505 - Shewana3_2797 0.45 -2.1 3,340,510 - Shewana3_2797 0.45 -0.0 3,340,582 + Shewana3_2797 0.49 +0.7 3,341,164 - Shewana3_2797 0.79 -0.9 3,341,254 + Shewana3_2797 0.84 +1.3 3,341,289 + Shewana3_2797 0.85 +0.7 3,341,374 + Shewana3_2797 0.90 -2.3 3,341,429 - -0.2 3,341,530 + +3.0 3,341,623 + +2.7 3,341,745 + +0.9 3,341,885 - Shewana3_2798 0.16 +0.7 3,341,918 + Shewana3_2798 0.20 -0.5 3,342,055 - Shewana3_2798 0.35 +0.7 3,342,055 - Shewana3_2798 0.35 -0.9 3,342,371 - Shewana3_2798 0.71 -0.3
Or see this region's nucleotide sequence