Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1686 and Shewana3_1687 are separated by 324 nucleotides Shewana3_1687 and Shewana3_1688 are separated by 114 nucleotides Shewana3_1688 and Shewana3_1689 are separated by 1 nucleotides
Shewana3_1686: Shewana3_1686 - 1,4-dihydroxy-2-naphtoate prenyltransferase (RefSeq), at 1,980,869 to 1,981,744
_1686
Shewana3_1687: Shewana3_1687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,982,069 to 1,983,022
_1687
Shewana3_1688: Shewana3_1688 - acyl-CoA thioesterase II (RefSeq), at 1,983,137 to 1,984,003
_1688
Shewana3_1689: Shewana3_1689 - hypothetical protein (RefSeq), at 1,984,005 to 1,984,409
_1689
Position (kb)
1982
1983
1984 Strain fitness (log2 ratio)
-1
0
1 at 1981.229 kb on + strand, within Shewana3_1686 at 1981.242 kb on + strand, within Shewana3_1686 at 1981.444 kb on + strand, within Shewana3_1686 at 1981.494 kb on - strand, within Shewana3_1686 at 1981.618 kb on + strand, within Shewana3_1686 at 1981.777 kb on + strand at 1981.999 kb on + strand at 1982.007 kb on - strand at 1982.007 kb on - strand at 1982.187 kb on - strand, within Shewana3_1687 at 1982.550 kb on + strand, within Shewana3_1687 at 1982.593 kb on + strand, within Shewana3_1687 at 1982.634 kb on + strand, within Shewana3_1687 at 1982.837 kb on + strand, within Shewana3_1687 at 1982.969 kb on + strand at 1982.969 kb on + strand at 1982.971 kb on - strand at 1983.080 kb on + strand at 1983.100 kb on + strand at 1983.131 kb on + strand at 1983.286 kb on - strand, within Shewana3_1688 at 1983.448 kb on + strand, within Shewana3_1688 at 1983.670 kb on - strand, within Shewana3_1688 at 1983.951 kb on - strand at 1983.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 1,981,229 + Shewana3_1686 0.41 +0.7 1,981,242 + Shewana3_1686 0.43 -0.3 1,981,444 + Shewana3_1686 0.66 +0.7 1,981,494 - Shewana3_1686 0.71 +1.3 1,981,618 + Shewana3_1686 0.86 +1.7 1,981,777 + -0.3 1,981,999 + +0.4 1,982,007 - -0.1 1,982,007 - -1.4 1,982,187 - Shewana3_1687 0.12 +0.7 1,982,550 + Shewana3_1687 0.50 -1.6 1,982,593 + Shewana3_1687 0.55 -0.9 1,982,634 + Shewana3_1687 0.59 +0.7 1,982,837 + Shewana3_1687 0.81 -0.5 1,982,969 + +0.7 1,982,969 + +1.0 1,982,971 - -1.6 1,983,080 + -0.3 1,983,100 + -0.0 1,983,131 + +0.5 1,983,286 - Shewana3_1688 0.17 +0.1 1,983,448 + Shewana3_1688 0.36 -0.7 1,983,670 - Shewana3_1688 0.61 +0.7 1,983,951 - +0.7 1,983,982 - +0.4
Or see this region's nucleotide sequence