Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1687

Experiment: acetate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1686 and Shewana3_1687 are separated by 324 nucleotidesShewana3_1687 and Shewana3_1688 are separated by 114 nucleotidesShewana3_1688 and Shewana3_1689 are separated by 1 nucleotides Shewana3_1686: Shewana3_1686 - 1,4-dihydroxy-2-naphtoate prenyltransferase (RefSeq), at 1,980,869 to 1,981,744 _1686 Shewana3_1687: Shewana3_1687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,982,069 to 1,983,022 _1687 Shewana3_1688: Shewana3_1688 - acyl-CoA thioesterase II (RefSeq), at 1,983,137 to 1,984,003 _1688 Shewana3_1689: Shewana3_1689 - hypothetical protein (RefSeq), at 1,984,005 to 1,984,409 _1689 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -1 0 1at 1981.229 kb on + strand, within Shewana3_1686at 1981.242 kb on + strand, within Shewana3_1686at 1981.444 kb on + strand, within Shewana3_1686at 1981.494 kb on - strand, within Shewana3_1686at 1981.618 kb on + strand, within Shewana3_1686at 1981.777 kb on + strandat 1981.999 kb on + strandat 1982.007 kb on - strandat 1982.007 kb on - strandat 1982.187 kb on - strand, within Shewana3_1687at 1982.550 kb on + strand, within Shewana3_1687at 1982.593 kb on + strand, within Shewana3_1687at 1982.634 kb on + strand, within Shewana3_1687at 1982.837 kb on + strand, within Shewana3_1687at 1982.969 kb on + strandat 1982.969 kb on + strandat 1982.971 kb on - strandat 1983.080 kb on + strandat 1983.100 kb on + strandat 1983.131 kb on + strandat 1983.286 kb on - strand, within Shewana3_1688at 1983.448 kb on + strand, within Shewana3_1688at 1983.670 kb on - strand, within Shewana3_1688at 1983.951 kb on - strandat 1983.982 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 50 mM
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1,981,229 + Shewana3_1686 0.41 +0.7
1,981,242 + Shewana3_1686 0.43 -0.3
1,981,444 + Shewana3_1686 0.66 +0.7
1,981,494 - Shewana3_1686 0.71 +1.3
1,981,618 + Shewana3_1686 0.86 +1.7
1,981,777 + -0.3
1,981,999 + +0.4
1,982,007 - -0.1
1,982,007 - -1.4
1,982,187 - Shewana3_1687 0.12 +0.7
1,982,550 + Shewana3_1687 0.50 -1.6
1,982,593 + Shewana3_1687 0.55 -0.9
1,982,634 + Shewana3_1687 0.59 +0.7
1,982,837 + Shewana3_1687 0.81 -0.5
1,982,969 + +0.7
1,982,969 + +1.0
1,982,971 - -1.6
1,983,080 + -0.3
1,983,100 + -0.0
1,983,131 + +0.5
1,983,286 - Shewana3_1688 0.17 +0.1
1,983,448 + Shewana3_1688 0.36 -0.7
1,983,670 - Shewana3_1688 0.61 +0.7
1,983,951 - +0.7
1,983,982 - +0.4

Or see this region's nucleotide sequence