Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0570 and Shewana3_0571 are separated by 18 nucleotides Shewana3_0571 and Shewana3_0572 are separated by 558 nucleotides
Shewana3_0570: Shewana3_0570 - diguanylate cyclase (RefSeq), at 662,313 to 663,287
_0570
Shewana3_0571: Shewana3_0571 - response regulator receiver protein (RefSeq), at 663,306 to 664,301
_0571
Shewana3_0572: Shewana3_0572 - enoyl-CoA hydratase (RefSeq), at 664,860 to 665,666
_0572
Position (kb) 663
664
665 Strain fitness (log2 ratio) -1
0
1
2
3 at 662.345 kb on - strand at 662.390 kb on - strand at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.529 kb on + strand, within Shewana3_0570 at 662.582 kb on - strand, within Shewana3_0570 at 662.627 kb on + strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.801 kb on + strand, within Shewana3_0570 at 662.848 kb on + strand, within Shewana3_0570 at 663.180 kb on + strand, within Shewana3_0570 at 663.326 kb on + strand at 663.480 kb on - strand, within Shewana3_0571 at 663.483 kb on + strand, within Shewana3_0571 at 663.527 kb on + strand, within Shewana3_0571 at 663.722 kb on + strand, within Shewana3_0571 at 663.724 kb on + strand, within Shewana3_0571 at 663.887 kb on + strand, within Shewana3_0571 at 664.109 kb on + strand, within Shewana3_0571 at 664.109 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.246 kb on - strand at 664.248 kb on - strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.294 kb on - strand at 664.336 kb on + strand at 664.394 kb on - strand at 664.646 kb on - strand at 664.903 kb on + strand at 664.911 kb on - strand at 665.159 kb on + strand, within Shewana3_0572 at 665.159 kb on + strand, within Shewana3_0572 at 665.186 kb on + strand, within Shewana3_0572 at 665.192 kb on - strand, within Shewana3_0572 at 665.295 kb on + strand, within Shewana3_0572
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 662,345 - -0.4 662,390 - +0.2 662,444 + Shewana3_0570 0.13 +1.1 662,444 + Shewana3_0570 0.13 +1.1 662,444 + Shewana3_0570 0.13 -0.5 662,444 + Shewana3_0570 0.13 -0.8 662,444 + Shewana3_0570 0.13 -1.1 662,444 + Shewana3_0570 0.13 +2.0 662,452 - Shewana3_0570 0.14 +0.0 662,452 - Shewana3_0570 0.14 +0.1 662,452 - Shewana3_0570 0.14 -0.5 662,452 - Shewana3_0570 0.14 -0.5 662,529 + Shewana3_0570 0.22 +3.0 662,582 - Shewana3_0570 0.28 -0.2 662,627 + Shewana3_0570 0.32 -1.6 662,707 - Shewana3_0570 0.40 +0.2 662,707 - Shewana3_0570 0.40 -0.2 662,801 + Shewana3_0570 0.50 +0.7 662,848 + Shewana3_0570 0.55 +0.2 663,180 + Shewana3_0570 0.89 -0.9 663,326 + -0.7 663,480 - Shewana3_0571 0.17 +0.5 663,483 + Shewana3_0571 0.18 +0.4 663,527 + Shewana3_0571 0.22 -0.1 663,722 + Shewana3_0571 0.42 +0.5 663,724 + Shewana3_0571 0.42 -1.1 663,887 + Shewana3_0571 0.58 -0.0 664,109 + Shewana3_0571 0.81 +0.5 664,109 - Shewana3_0571 0.81 -1.2 664,166 - Shewana3_0571 0.86 +1.1 664,166 - Shewana3_0571 0.86 +0.6 664,166 - Shewana3_0571 0.86 -0.5 664,246 - -0.5 664,248 - -0.6 664,281 + +0.7 664,281 + -1.3 664,281 + -1.0 664,294 - -0.2 664,336 + +0.5 664,394 - -0.0 664,646 - -0.0 664,903 + -0.6 664,911 - -1.6 665,159 + Shewana3_0572 0.37 +0.4 665,159 + Shewana3_0572 0.37 +0.4 665,186 + Shewana3_0572 0.40 -0.5 665,192 - Shewana3_0572 0.41 +0.7 665,295 + Shewana3_0572 0.54 +0.1
Or see this region's nucleotide sequence