Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2569

Experiment: Doxycycline hyclate 0.00078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiL and Synpcc7942_2568 are separated by 11 nucleotidesSynpcc7942_2568 and pyrF overlap by 4 nucleotidespyrF and tyrS are separated by 3 nucleotides Synpcc7942_2567: thiL - thiamine monophosphate kinase, at 2,646,633 to 2,647,616 thiL Synpcc7942_2568: Synpcc7942_2568 - hypothetical protein, at 2,647,628 to 2,648,101 _2568 Synpcc7942_2569: pyrF - orotidine 5'-phosphate decarboxylase, at 2,648,098 to 2,648,820 pyrF Synpcc7942_2570: tyrS - tyrosyl-tRNA synthetase, at 2,648,824 to 2,650,032 tyrS Position (kb) 2648 2649Strain fitness (log2 ratio) -2 -1 0 1at 2647.618 kb on - strandat 2647.626 kb on + strandat 2647.626 kb on + strandat 2647.672 kb on + strandat 2647.712 kb on - strand, within Synpcc7942_2568at 2647.725 kb on + strand, within Synpcc7942_2568at 2647.759 kb on + strand, within Synpcc7942_2568at 2647.795 kb on + strand, within Synpcc7942_2568at 2647.807 kb on + strand, within Synpcc7942_2568at 2647.807 kb on + strand, within Synpcc7942_2568at 2647.861 kb on + strand, within Synpcc7942_2568at 2647.931 kb on - strand, within Synpcc7942_2568at 2647.957 kb on + strand, within Synpcc7942_2568at 2647.958 kb on + strand, within Synpcc7942_2568at 2647.980 kb on - strand, within Synpcc7942_2568at 2648.038 kb on - strand, within Synpcc7942_2568at 2648.043 kb on + strand, within Synpcc7942_2568at 2648.051 kb on - strand, within Synpcc7942_2568at 2648.075 kb on + strandat 2648.097 kb on + strandat 2648.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.00078125 mg/ml
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2,647,618 - +0.9
2,647,626 + -1.1
2,647,626 + -0.3
2,647,672 + -2.7
2,647,712 - Synpcc7942_2568 0.18 -1.0
2,647,725 + Synpcc7942_2568 0.20 -0.8
2,647,759 + Synpcc7942_2568 0.28 -0.4
2,647,795 + Synpcc7942_2568 0.35 +0.7
2,647,807 + Synpcc7942_2568 0.38 -1.6
2,647,807 + Synpcc7942_2568 0.38 -0.7
2,647,861 + Synpcc7942_2568 0.49 -1.4
2,647,931 - Synpcc7942_2568 0.64 +0.2
2,647,957 + Synpcc7942_2568 0.69 -0.2
2,647,958 + Synpcc7942_2568 0.70 -0.6
2,647,980 - Synpcc7942_2568 0.74 -2.1
2,648,038 - Synpcc7942_2568 0.86 +1.0
2,648,043 + Synpcc7942_2568 0.88 +0.1
2,648,051 - Synpcc7942_2568 0.89 -0.3
2,648,075 + +1.0
2,648,097 + +1.2
2,648,107 - +0.2

Or see this region's nucleotide sequence