Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2260

Experiment: Doxycycline hyclate 0.00078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.00078125 mg/ml
2,327,911	+	avtA	Synpcc7942_2258	0.70	+0.9
2,327,911	+	avtA	Synpcc7942_2258	0.70	+0.2
2,327,919	-	avtA	Synpcc7942_2258	0.71	-0.4
2,327,919	-	avtA	Synpcc7942_2258	0.71	-0.1
2,327,993	-	avtA	Synpcc7942_2258	0.76	-0.1
2,328,012	+	avtA	Synpcc7942_2258	0.78	-0.7
2,328,019	-	avtA	Synpcc7942_2258	0.78	-2.7
2,328,020	-	avtA	Synpcc7942_2258	0.78	-0.1
2,328,059	+	avtA	Synpcc7942_2258	0.81	+0.5
2,328,059	+	avtA	Synpcc7942_2258	0.81	-0.7
2,328,064	+	avtA	Synpcc7942_2258	0.82	+0.8
2,328,064	+	avtA	Synpcc7942_2258	0.82	-1.5
2,328,067	-	avtA	Synpcc7942_2258	0.82	+1.4
2,328,067	-	avtA	Synpcc7942_2258	0.82	-0.3
2,328,069	+	avtA	Synpcc7942_2258	0.82	+0.2
2,328,072	-	avtA	Synpcc7942_2258	0.82	-0.5
2,328,132	-				+1.4
2,328,148	-	avtA	Synpcc7942_2258	0.88	-0.9
2,328,151	+	avtA	Synpcc7942_2258	0.89	+1.4
2,328,167	+	avtA	Synpcc7942_2258	0.90	+0.4
2,328,168	+				-0.4
2,328,250	+				-3.3
2,328,256	+				+0.4
2,328,256	-				-0.4
2,328,258	+				-3.1
2,328,258	+				-3.6
2,328,266	-				-1.4
2,328,266	-				-1.5
2,328,266	-				-0.0
2,328,266	-				-1.7
2,328,274	-				+1.7
2,328,343	-				+0.1
2,328,361	+	rimM	Synpcc7942_2259	0.11	-4.8
2,328,424	+	rimM	Synpcc7942_2259	0.23	-2.5
2,328,688	-	rimM	Synpcc7942_2259	0.71	-4.1
2,328,761	-	rimM	Synpcc7942_2259	0.84	-3.5
2,328,826	+				-2.7
2,328,834	-				-5.8
2,328,855	+				+1.0
2,328,914	-		Synpcc7942_2260	0.11	+1.1
2,328,930	+		Synpcc7942_2260	0.16	+1.0
2,328,930	+		Synpcc7942_2260	0.16	+1.8
2,328,938	-		Synpcc7942_2260	0.18	+0.3
2,328,938	-		Synpcc7942_2260	0.18	-1.1
2,328,989	+		Synpcc7942_2260	0.34	-0.8
2,328,989	+		Synpcc7942_2260	0.34	+0.9
2,328,989	+		Synpcc7942_2260	0.34	+0.4
2,329,022	+		Synpcc7942_2260	0.44	-0.1
2,329,045	-		Synpcc7942_2260	0.51	-0.8
2,329,079	-		Synpcc7942_2260	0.61	-0.7
2,329,092	+		Synpcc7942_2260	0.65	+0.3
2,329,092	+		Synpcc7942_2260	0.65	-0.1
2,329,092	+		Synpcc7942_2260	0.65	+0.3
2,329,100	-		Synpcc7942_2260	0.68	-1.1
2,329,170	+		Synpcc7942_2260	0.89	-0.7
2,329,178	-				+2.4
2,329,227	+				+0.2
2,329,235	-				+1.7
2,329,242	+				+0.2
2,329,259	+				+3.0
2,329,345	+				+0.2
2,329,349	-				-1.3
2,329,369	+				+1.2
2,329,374	-				+0.2
2,329,374	-				-0.1
2,329,419	-				+0.3
2,329,419	-				-0.4
2,329,432	-				-1.1
2,329,439	+				+0.2
2,329,453	-				+1.5
2,329,455	-				+0.3
2,329,457	+				-0.1
2,329,457	+				+1.2
2,329,481	+				+0.2
2,329,481	+				+0.3
2,329,487	-		Synpcc7942_2261	0.11	-0.1
2,329,489	-		Synpcc7942_2261	0.12	-1.1
2,329,508	+		Synpcc7942_2261	0.17	+0.1
2,329,523	-		Synpcc7942_2261	0.22	-1.7
2,329,527	+		Synpcc7942_2261	0.23	+0.8
2,329,528	+		Synpcc7942_2261	0.23	-0.5
2,329,535	-		Synpcc7942_2261	0.25	+0.3
2,329,536	-		Synpcc7942_2261	0.25	+0.2
2,329,572	-		Synpcc7942_2261	0.36	-0.8
2,329,585	+		Synpcc7942_2261	0.40	+0.6
2,329,594	-		Synpcc7942_2261	0.42	-0.1
2,329,612	-		Synpcc7942_2261	0.48	+0.2
2,329,652	-		Synpcc7942_2261	0.59	-3.3
2,329,652	-		Synpcc7942_2261	0.59	-0.1
2,329,655	+		Synpcc7942_2261	0.60	+0.7
2,329,660	+				+0.9
2,329,663	-		Synpcc7942_2261	0.63	+0.3
2,329,735	+		Synpcc7942_2261	0.84	-1.2
2,329,735	+				-1.7
2,329,735	+		Synpcc7942_2261	0.84	+0.5
2,329,743	-		Synpcc7942_2261	0.86	-0.1
2,329,752	+		Synpcc7942_2261	0.89	+1.9
2,329,774	+				+0.2
2,329,781	+				+0.2
2,329,784	-				-0.1
2,329,786	+				+0.7
2,329,794	-				+0.0
2,329,794	-				-2.1
2,329,797	+				-1.1
2,329,797	+				+0.4
2,329,805	-				-1.1
2,329,805	-				-2.1
2,329,821	+				+0.3
2,329,834	+				+0.4
2,329,835	+				-1.1
2,329,846	+				+0.5
2,329,846	+				-0.1
2,329,846	+				-0.7
2,329,851	+				+0.3
2,329,854	-				-0.1
2,329,854	-				+1.3
2,329,861	+				-0.1
2,329,861	+				+2.4
2,329,861	+				-0.1
2,329,861	+				-2.8
2,329,861	+				-0.0
2,329,861	+				+1.8
2,329,861	+				-1.5
2,329,861	+				+0.2
2,329,861	+				-0.1
2,329,861	+				+0.2
2,329,869	-				-0.1
2,329,869	-				-1.1
2,329,869	-				-1.4
2,329,869	-				-1.1
2,329,869	-				-0.8
2,329,869	-				+0.2
2,329,869	-				-0.7
2,329,927	-				+2.7
2,329,957	-		Synpcc7942_2262	0.12	+1.1
2,329,959	+		Synpcc7942_2262	0.12	-1.5
2,329,970	+		Synpcc7942_2262	0.13	+1.0
2,329,973	-		Synpcc7942_2262	0.13	-0.2
2,329,978	+		Synpcc7942_2262	0.14	+0.3
2,330,011	+				+1.4
2,330,019	-		Synpcc7942_2262	0.16	+0.7
2,330,019	-		Synpcc7942_2262	0.16	-0.5
2,330,043	-		Synpcc7942_2262	0.18	-0.1
2,330,054	-		Synpcc7942_2262	0.19	-0.1
2,330,062	-		Synpcc7942_2262	0.20	+2.9
2,330,092	+		Synpcc7942_2262	0.22	+0.9
2,330,099	+		Synpcc7942_2262	0.22	+0.4
2,330,146	+		Synpcc7942_2262	0.25	-0.5
2,330,148	-		Synpcc7942_2262	0.26	+0.4
2,330,154	-		Synpcc7942_2262	0.26	-2.1
2,330,179	-				-1.1
2,330,204	-		Synpcc7942_2262	0.30	+0.1