Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2157

Experiment: Doxycycline hyclate 0.00078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.00078125 mg/ml
2,239,858	-	glnA	Synpcc7942_2156	0.39	-2.4
2,239,891	-	glnA	Synpcc7942_2156	0.41	-2.8
2,239,919	-	glnA	Synpcc7942_2156	0.43	-2.6
2,239,924	-	glnA	Synpcc7942_2156	0.44	-1.6
2,240,052	+	glnA	Synpcc7942_2156	0.53	-2.2
2,240,081	-	glnA	Synpcc7942_2156	0.55	-3.1
2,240,117	-	glnA	Synpcc7942_2156	0.57	-2.5
2,240,150	-	glnA	Synpcc7942_2156	0.59	-1.1
2,240,178	+	glnA	Synpcc7942_2156	0.61	-4.9
2,240,209	-	glnA	Synpcc7942_2156	0.64	-2.7
2,240,250	+	glnA	Synpcc7942_2156	0.66	-2.7
2,240,258	-	glnA	Synpcc7942_2156	0.67	-1.9
2,240,286	-	glnA	Synpcc7942_2156	0.69	-2.1
2,240,337	+	glnA	Synpcc7942_2156	0.73	-1.4
2,240,367	+	glnA	Synpcc7942_2156	0.75	-3.3
2,240,369	+	glnA	Synpcc7942_2156	0.75	-3.4
2,240,376	-	glnA	Synpcc7942_2156	0.75	-4.1
2,240,377	-	glnA	Synpcc7942_2156	0.75	-0.1
2,240,379	+	glnA	Synpcc7942_2156	0.76	-2.3
2,240,402	+	glnA	Synpcc7942_2156	0.77	-2.7
2,240,423	+	glnA	Synpcc7942_2156	0.79	-2.8
2,240,576	-	glnA	Synpcc7942_2156	0.89	-2.5
2,240,576	-	glnA	Synpcc7942_2156	0.89	-2.1
2,240,618	+				-2.3
2,240,672	+				-5.0
2,240,680	-				-3.1
2,240,680	-				-2.9
2,240,705	-				-1.7
2,240,716	-				-1.1
2,240,725	-				-3.6
2,240,730	-				-1.9
2,240,756	+				-3.2
2,240,761	+				-1.3
2,240,782	-				-3.7
2,240,806	-				-1.7
2,240,806	-				-1.7
2,240,820	+				-1.3
2,240,882	-		Synpcc7942_2157	0.29	-2.5
2,240,887	-		Synpcc7942_2157	0.31	+0.5
2,240,935	+		Synpcc7942_2157	0.47	+0.3
2,240,945	+		Synpcc7942_2157	0.51	+2.0
2,240,950	+		Synpcc7942_2157	0.53	+1.0
2,241,028	+		Synpcc7942_2157	0.80	-0.1
2,241,028	+		Synpcc7942_2157	0.80	-0.7
2,241,036	-		Synpcc7942_2157	0.83	+0.7
2,241,109	-				+1.5
2,241,112	-				+0.9
2,241,151	+				+0.3
2,241,216	-	apcF	Synpcc7942_2158	0.19	-0.5
2,241,227	-	apcF	Synpcc7942_2158	0.21	+0.5
2,241,276	-	apcF	Synpcc7942_2158	0.31	+1.1
2,241,304	-	apcF	Synpcc7942_2158	0.36	+0.3
2,241,353	-				+0.9
2,241,381	-	apcF	Synpcc7942_2158	0.51	+0.5
2,241,399	+	apcF	Synpcc7942_2158	0.55	+0.9
2,241,399	+	apcF	Synpcc7942_2158	0.55	+0.7
2,241,399	+	apcF	Synpcc7942_2158	0.55	+0.8
2,241,399	+	apcF	Synpcc7942_2158	0.55	+2.5
2,241,407	-	apcF	Synpcc7942_2158	0.56	+1.4
2,241,411	-				-1.7
2,241,414	+	apcF	Synpcc7942_2158	0.58	-1.7
2,241,422	-	apcF	Synpcc7942_2158	0.59	-0.7
2,241,465	+	apcF	Synpcc7942_2158	0.68	+1.6
2,241,473	+	apcF	Synpcc7942_2158	0.69	+0.3
2,241,493	+	apcF	Synpcc7942_2158	0.73	-1.0
2,241,493	+	apcF	Synpcc7942_2158	0.73	+0.3
2,241,493	+	apcF	Synpcc7942_2158	0.73	-0.1
2,241,511	+	apcF	Synpcc7942_2158	0.77	+0.8
2,241,516	-	apcF	Synpcc7942_2158	0.78	+0.4
2,241,551	+	apcF	Synpcc7942_2158	0.85	-1.1
2,241,559	-	apcF	Synpcc7942_2158	0.86	+0.6
2,241,563	-	apcF	Synpcc7942_2158	0.87	+1.8
2,241,568	-	apcF	Synpcc7942_2158	0.88	+0.3
2,241,596	+				-0.5
2,241,615	-				+0.7
2,241,615	-				+0.6
2,241,623	+				+0.8
2,241,623	-				-0.4
2,241,731	-				-0.1
2,241,749	+				-0.4
2,241,750	+				+0.3
2,241,813	+		Synpcc7942_2159	0.10	+0.8
2,241,844	-		Synpcc7942_2159	0.13	+2.2
2,241,886	+		Synpcc7942_2159	0.18	+0.8
2,241,894	-		Synpcc7942_2159	0.19	+0.5
2,241,896	+		Synpcc7942_2159	0.19	-0.7
2,241,929	+		Synpcc7942_2159	0.23	+1.0
2,241,929	+		Synpcc7942_2159	0.23	+1.0
2,241,964	-		Synpcc7942_2159	0.26	+0.3
2,241,972	-		Synpcc7942_2159	0.27	+0.6
2,241,979	+		Synpcc7942_2159	0.28	-1.1
2,242,009	-		Synpcc7942_2159	0.31	+0.0
2,242,042	+		Synpcc7942_2159	0.35	+0.1
2,242,042	+		Synpcc7942_2159	0.35	-0.5
2,242,042	+		Synpcc7942_2159	0.35	+0.1
2,242,050	-		Synpcc7942_2159	0.35	-0.2
2,242,067	+		Synpcc7942_2159	0.37	-0.2
2,242,074	+		Synpcc7942_2159	0.38	+0.9
2,242,075	-		Synpcc7942_2159	0.38	+0.9