Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1975

Experiment: Doxycycline hyclate 0.00078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.00078125 mg/ml
2,044,436	+				+0.2
2,044,436	+				-2.5
2,044,436	+				-0.3
2,044,444	+				-0.4
2,044,444	-				+0.9
2,044,444	-				-1.5
2,044,444	-				-0.1
2,044,471	-				-0.5
2,044,475	-	scpA	Synpcc7942_1974	0.10	-1.2
2,044,479	+	scpA	Synpcc7942_1974	0.11	-0.9
2,044,481	+	scpA	Synpcc7942_1974	0.11	+0.5
2,044,527	+	scpA	Synpcc7942_1974	0.17	-2.1
2,044,527	+	scpA	Synpcc7942_1974	0.17	-1.4
2,044,535	-	scpA	Synpcc7942_1974	0.18	+0.3
2,044,535	-	scpA	Synpcc7942_1974	0.18	+1.5
2,044,535	-	scpA	Synpcc7942_1974	0.18	-1.1
2,044,583	+	scpA	Synpcc7942_1974	0.23	-0.0
2,044,592	-	scpA	Synpcc7942_1974	0.24	-0.1
2,044,611	-	scpA	Synpcc7942_1974	0.27	-0.9
2,044,619	+	scpA	Synpcc7942_1974	0.28	-2.2
2,044,639	-	scpA	Synpcc7942_1974	0.30	-0.7
2,044,649	-	scpA	Synpcc7942_1974	0.31	-0.1
2,044,649	-	scpA	Synpcc7942_1974	0.31	-0.1
2,044,680	+	scpA	Synpcc7942_1974	0.35	+1.5
2,044,702	-	scpA	Synpcc7942_1974	0.38	-1.1
2,044,726	-	scpA	Synpcc7942_1974	0.40	+0.3
2,044,790	+	scpA	Synpcc7942_1974	0.48	-2.7
2,044,798	-	scpA	Synpcc7942_1974	0.49	+0.7
2,044,844	+	scpA	Synpcc7942_1974	0.54	-0.1
2,044,844	+	scpA	Synpcc7942_1974	0.54	+1.9
2,044,846	+	scpA	Synpcc7942_1974	0.55	-1.1
2,044,846	+	scpA	Synpcc7942_1974	0.55	-0.1
2,044,854	-	scpA	Synpcc7942_1974	0.56	-0.7
2,044,854	-	scpA	Synpcc7942_1974	0.56	+0.3
2,044,854	-	scpA	Synpcc7942_1974	0.56	-1.3
2,044,978	-	scpA	Synpcc7942_1974	0.70	-1.3
2,044,987	-	scpA	Synpcc7942_1974	0.72	+0.5
2,044,987	-	scpA	Synpcc7942_1974	0.72	+0.2
2,044,992	+	scpA	Synpcc7942_1974	0.72	-1.7
2,045,021	+	scpA	Synpcc7942_1974	0.76	+0.6
2,045,039	+	scpA	Synpcc7942_1974	0.78	+0.3
2,045,039	+	scpA	Synpcc7942_1974	0.78	+0.1
2,045,045	+	scpA	Synpcc7942_1974	0.78	+0.7
2,045,052	+	scpA	Synpcc7942_1974	0.79	-0.9
2,045,052	+				-0.1
2,045,102	+	scpA	Synpcc7942_1974	0.85	+1.5
2,045,104	+	scpA	Synpcc7942_1974	0.86	+0.4
2,045,110	-	scpA	Synpcc7942_1974	0.86	+0.1
2,045,112	-	scpA	Synpcc7942_1974	0.86	-0.1
2,045,199	+				+1.0
2,045,245	+				-0.9
2,045,251	-				+0.3
2,045,255	+				-0.8
2,045,270	+				+0.9
2,045,278	-				-0.9
2,045,278	-				+0.1
2,045,367	+				+0.6
2,045,367	+				+0.6
2,045,367	+				-0.5
2,045,367	+				+0.4
2,045,367	+				+1.1
2,045,370	-				-1.1
2,045,375	-				-0.9
2,045,375	-				-0.1
2,045,375	-				+1.8
2,045,375	-				+0.9
2,045,375	-				-1.6
2,045,385	-				-2.1
2,045,409	-				-0.9
2,045,426	+				-1.7
2,045,486	+		Synpcc7942_1975	0.21	-1.7
2,045,536	+		Synpcc7942_1975	0.36	-2.1
2,045,639	-		Synpcc7942_1975	0.65	-1.5
2,045,663	-		Synpcc7942_1975	0.71	-1.5
2,045,673	-		Synpcc7942_1975	0.74	-0.6
2,045,814	+				-2.9
2,045,859	-				+0.3
2,045,862	+				+0.3
2,045,887	+				-0.8
2,045,903	+				+0.3
2,045,926	+				-0.5
2,045,934	-				+0.3
2,045,992	+	ndhD	Synpcc7942_1976	0.12	+0.9
2,046,163	-	ndhD	Synpcc7942_1976	0.23	+0.4
2,046,235	-	ndhD	Synpcc7942_1976	0.28	+2.2
2,046,270	-	ndhD	Synpcc7942_1976	0.30	+0.8
2,046,308	+	ndhD	Synpcc7942_1976	0.32	+0.6
2,046,316	-				+1.9
2,046,327	+	ndhD	Synpcc7942_1976	0.33	-1.5
2,046,335	-	ndhD	Synpcc7942_1976	0.34	+0.4
2,046,361	+	ndhD	Synpcc7942_1976	0.35	+1.2
2,046,365	+	ndhD	Synpcc7942_1976	0.36	-0.5
2,046,392	+	ndhD	Synpcc7942_1976	0.37	-0.0
2,046,392	+	ndhD	Synpcc7942_1976	0.37	-1.9
2,046,400	-	ndhD	Synpcc7942_1976	0.38	-1.0
2,046,414	-	ndhD	Synpcc7942_1976	0.39	+1.9
2,046,447	+	ndhD	Synpcc7942_1976	0.41	-1.5
2,046,447	+	ndhD	Synpcc7942_1976	0.41	+0.9
2,046,487	+	ndhD	Synpcc7942_1976	0.43	-1.1
2,046,492	+	ndhD	Synpcc7942_1976	0.44	+0.0
2,046,497	+	ndhD	Synpcc7942_1976	0.44	+0.2
2,046,497	+	ndhD	Synpcc7942_1976	0.44	-0.3
2,046,497	+				+0.5
2,046,510	-	ndhD	Synpcc7942_1976	0.45	+0.2
2,046,515	-	ndhD	Synpcc7942_1976	0.45	-1.8
2,046,517	+	ndhD	Synpcc7942_1976	0.45	+1.5
2,046,544	-	ndhD	Synpcc7942_1976	0.47	-1.3
2,046,588	-	ndhD	Synpcc7942_1976	0.50	+0.5
2,046,603	+	ndhD	Synpcc7942_1976	0.50	+1.5
2,046,608	+	ndhD	Synpcc7942_1976	0.51	-0.5
2,046,608	+	ndhD	Synpcc7942_1976	0.51	-0.1
2,046,608	+	ndhD	Synpcc7942_1976	0.51	+0.6
2,046,611	-	ndhD	Synpcc7942_1976	0.51	-1.4
2,046,611	-	ndhD	Synpcc7942_1976	0.51	+0.2
2,046,611	-	ndhD	Synpcc7942_1976	0.51	-0.2
2,046,611	-	ndhD	Synpcc7942_1976	0.51	+0.9
2,046,630	-	ndhD	Synpcc7942_1976	0.52	-1.1
2,046,647	-	ndhD	Synpcc7942_1976	0.53	+0.8
2,046,656	-	ndhD	Synpcc7942_1976	0.54	-2.3
2,046,696	-	ndhD	Synpcc7942_1976	0.56	+0.3
2,046,748	+	ndhD	Synpcc7942_1976	0.60	+1.3
2,046,750	+	ndhD	Synpcc7942_1976	0.60	+0.5
2,046,756	-	ndhD	Synpcc7942_1976	0.60	+1.5
2,046,758	+	ndhD	Synpcc7942_1976	0.60	-0.9
2,046,758	+	ndhD	Synpcc7942_1976	0.60	-1.1
2,046,758	+	ndhD	Synpcc7942_1976	0.60	+0.6