Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1507

Experiment: Doxycycline hyclate 0.00078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.00078125 mg/ml
1,556,429	+		Synpcc7942_1506	0.80	+1.1
1,556,450	-		Synpcc7942_1506	0.85	-0.4
1,556,451	-		Synpcc7942_1506	0.85	+0.7
1,556,454	+		Synpcc7942_1506	0.86	+1.9
1,556,466	+		Synpcc7942_1506	0.88	+0.7
1,556,466	+		Synpcc7942_1506	0.88	-0.4
1,556,474	-				-0.2
1,556,491	-				+1.0
1,556,492	+				+1.5
1,556,492	+				+1.1
1,556,492	+				+1.2
1,556,492	+				+0.8
1,556,499	+				+0.9
1,556,499	+				+0.2
1,556,500	-				-0.1
1,556,500	-				+0.5
1,556,500	-				+1.2
1,556,500	-				+0.3
1,556,508	-				-0.1
1,556,570	+				+2.7
1,556,578	-				-1.5
1,556,578	-				+0.3
1,556,578	-				-0.9
1,556,616	-				+2.1
1,556,676	+				+0.5
1,556,676	+				-0.1
1,556,684	-				-0.7
1,556,721	-				+0.6
1,556,774	-				+0.6
1,556,803	+				+1.4
1,556,803	+				+0.3
1,556,928	+				-1.1
1,556,975	+				+2.2
1,556,986	-				+0.1
1,557,001	+				-0.1
1,557,020	+				+0.9
1,557,020	+				-0.1
1,557,020	+				+1.2
1,557,028	-				-0.1
1,557,033	-				-0.8
1,557,093	+				+0.2
1,557,145	+				-0.5
1,557,146	+				+0.4
1,557,146	+				-0.1
1,557,148	+				-1.7
1,557,156	+				-1.0
1,557,156	+				-0.6
1,557,232	-				-2.4
1,557,358	+				-0.5
1,557,366	-				-0.4
1,557,366	-				-1.2
1,557,394	+				-1.7
1,557,402	-				+1.1
1,557,402	-				+1.9
1,557,500	-	lipA	Synpcc7942_1507	0.11	-1.3
1,557,514	-	lipA	Synpcc7942_1507	0.13	-4.1
1,557,519	-	lipA	Synpcc7942_1507	0.13	-3.3
1,557,551	-	lipA	Synpcc7942_1507	0.17	-0.1
1,557,565	-				-0.1
1,557,565	-	lipA	Synpcc7942_1507	0.18	-2.4
1,557,565	-	lipA	Synpcc7942_1507	0.18	-1.4
1,557,604	+	lipA	Synpcc7942_1507	0.22	-3.4
1,557,666	+	lipA	Synpcc7942_1507	0.29	-0.7
1,557,671	-	lipA	Synpcc7942_1507	0.29	-0.8
1,557,711	+	lipA	Synpcc7942_1507	0.34	-0.9
1,557,719	-	lipA	Synpcc7942_1507	0.35	-0.9
1,557,765	-	lipA	Synpcc7942_1507	0.39	-1.7
1,557,785	-	lipA	Synpcc7942_1507	0.42	-2.4
1,557,788	+	lipA	Synpcc7942_1507	0.42	-1.7
1,557,817	+	lipA	Synpcc7942_1507	0.45	-2.4
1,557,822	+	lipA	Synpcc7942_1507	0.46	-3.6
1,557,822	+	lipA	Synpcc7942_1507	0.46	-1.6
1,557,822	+	lipA	Synpcc7942_1507	0.46	-4.9
1,557,825	-	lipA	Synpcc7942_1507	0.46	-0.1
1,557,886	-	lipA	Synpcc7942_1507	0.52	-3.1
1,557,895	+	lipA	Synpcc7942_1507	0.53	+0.6
1,557,908	-				-2.4
1,557,938	-	lipA	Synpcc7942_1507	0.58	+0.9
1,557,980	+	lipA	Synpcc7942_1507	0.62	-2.9
1,557,983	+	lipA	Synpcc7942_1507	0.63	+1.6
1,557,993	-	lipA	Synpcc7942_1507	0.64	-2.3
1,557,996	+	lipA	Synpcc7942_1507	0.64	-0.1
1,558,031	+	lipA	Synpcc7942_1507	0.68	-0.7
1,558,063	-	lipA	Synpcc7942_1507	0.71	-2.8
1,558,070	-				-1.7
1,558,082	+	lipA	Synpcc7942_1507	0.73	-1.3
1,558,082	+				+0.9
1,558,084	+	lipA	Synpcc7942_1507	0.74	-1.4
1,558,084	+	lipA	Synpcc7942_1507	0.74	-0.8
1,558,092	-				-0.1
1,558,092	-	lipA	Synpcc7942_1507	0.74	-2.9
1,558,092	-	lipA	Synpcc7942_1507	0.74	-2.1
1,558,099	-	lipA	Synpcc7942_1507	0.75	-1.1
1,558,105	+	lipA	Synpcc7942_1507	0.76	-1.4
1,558,113	-	lipA	Synpcc7942_1507	0.77	-1.4
1,558,123	-	lipA	Synpcc7942_1507	0.78	-0.9
1,558,154	+	lipA	Synpcc7942_1507	0.81	-2.1
1,558,162	-	lipA	Synpcc7942_1507	0.82	-1.3
1,558,219	+	lipA	Synpcc7942_1507	0.88	-2.3
1,558,239	+				-1.7
1,558,239	+				-1.1
1,558,239	+				-3.1
1,558,247	-				+0.1
1,558,247	-				-1.7
1,558,247	-				+0.3
1,558,270	-				+0.5
1,558,283	+				+0.8
1,558,283	+				-1.7
1,558,283	+				-2.5
1,558,283	+				-0.1
1,558,283	+				-0.1
1,558,283	+				-2.8
1,558,291	-				-1.1
1,558,291	-				-0.8
1,558,291	-				-1.4
1,558,291	-				-2.1
1,558,291	-				-1.1
1,558,291	-				-0.3
1,558,298	+				+0.6
1,558,312	+				-0.1
1,558,333	+				+0.7
1,558,333	+				+1.4
1,558,342	+				-0.9
1,558,350	-				-0.1
1,558,350	-				+1.9
1,558,361	+				-0.3
1,558,363	-				-1.4
1,558,379	-				-0.7
1,558,379	-				+1.8
1,558,379	-				+0.3
1,558,379	-				+0.9
1,558,407	-				-0.8
1,558,450	-				-0.6
1,558,463	+				-0.3
1,558,463	+				-1.1
1,558,511	+				+1.3
1,558,516	+				+0.3
1,558,521	+				-1.7
1,558,521	+				+0.6
1,558,521	+				+2.5
1,558,521	+				+0.6
1,558,521	+				+1.4
1,558,521	+				+0.6
1,558,529	-				-2.3
1,558,529	-				+1.9
1,558,529	-				+0.2
1,558,533	+				-1.3
1,558,535	+				-1.7
1,558,535	+				-1.1
1,558,540	+				-0.3
1,558,543	-				+0.4
1,558,543	-				+1.1
1,558,545	+				-1.1
1,558,545	+				+1.6
1,558,545	+				-0.4
1,558,545	+				-1.0
1,558,545	+				-1.1
1,558,550	-				+1.2
1,558,550	-				-2.1
1,558,553	-				+0.1
1,558,553	-				+2.1
1,558,553	-				+0.7
1,558,555	+				-0.7
1,558,563	-		Synpcc7942_1508	0.11	+1.8
1,558,563	-		Synpcc7942_1508	0.11	+1.2
1,558,564	-		Synpcc7942_1508	0.11	+1.5
1,558,610	+		Synpcc7942_1508	0.17	-0.4
1,558,610	+		Synpcc7942_1508	0.17	+2.2
1,558,610	+		Synpcc7942_1508	0.17	-0.5
1,558,610	+		Synpcc7942_1508	0.17	+0.5
1,558,615	+		Synpcc7942_1508	0.18	+0.6
1,558,618	-		Synpcc7942_1508	0.18	-1.3
1,558,618	-		Synpcc7942_1508	0.18	-0.3
1,558,618	-		Synpcc7942_1508	0.18	-0.4
1,558,618	-		Synpcc7942_1508	0.18	+0.3
1,558,618	-		Synpcc7942_1508	0.18	+0.5
1,558,641	-		Synpcc7942_1508	0.22	-1.0
1,558,641	-		Synpcc7942_1508	0.22	+0.9
1,558,651	-		Synpcc7942_1508	0.23	-0.5
1,558,655	+		Synpcc7942_1508	0.24	-0.4
1,558,655	+		Synpcc7942_1508	0.24	+1.5
1,558,655	+		Synpcc7942_1508	0.24	+2.7
1,558,670	+		Synpcc7942_1508	0.26	+0.9
1,558,678	-		Synpcc7942_1508	0.27	-0.7
1,558,704	-		Synpcc7942_1508	0.30	-0.8
1,558,706	-		Synpcc7942_1508	0.31	+0.3
1,558,709	+		Synpcc7942_1508	0.31	+0.3
1,558,709	+		Synpcc7942_1508	0.31	-1.7
1,558,750	-		Synpcc7942_1508	0.37	+0.6
1,558,788	+		Synpcc7942_1508	0.42	-1.1
1,558,789	-		Synpcc7942_1508	0.42	+0.5
1,558,801	-		Synpcc7942_1508	0.44	-1.5
1,558,805	+		Synpcc7942_1508	0.44	-0.9
1,558,831	+		Synpcc7942_1508	0.48	+0.1
1,558,866	+		Synpcc7942_1508	0.53	+0.5
1,558,869	-		Synpcc7942_1508	0.53	-1.1
1,558,899	+		Synpcc7942_1508	0.57	+2.2
1,558,914	+		Synpcc7942_1508	0.59	-1.7
1,558,921	+		Synpcc7942_1508	0.60	-2.1
1,558,921	+		Synpcc7942_1508	0.60	+0.6
1,558,929	-		Synpcc7942_1508	0.61	+1.7
1,558,929	-		Synpcc7942_1508	0.61	+0.6
1,558,946	-		Synpcc7942_1508	0.64	+0.7
1,558,972	+		Synpcc7942_1508	0.67	+0.6
1,558,980	-		Synpcc7942_1508	0.68	+0.8
1,559,000	+		Synpcc7942_1508	0.71	-0.5
1,559,008	-		Synpcc7942_1508	0.72	+0.7
1,559,008	-		Synpcc7942_1508	0.72	-0.1
1,559,052	-				+0.5
1,559,053	-		Synpcc7942_1508	0.78	-2.1
1,559,059	+		Synpcc7942_1508	0.79	+0.9
1,559,072	+				+1.2
1,559,077	+		Synpcc7942_1508	0.82	-0.1
1,559,077	+		Synpcc7942_1508	0.82	-0.7
1,559,077	+		Synpcc7942_1508	0.82	+0.8
1,559,077	+		Synpcc7942_1508	0.82	-0.1
1,559,077	+		Synpcc7942_1508	0.82	+1.3
1,559,085	-		Synpcc7942_1508	0.83	-1.0
1,559,085	-		Synpcc7942_1508	0.83	-0.8
1,559,090	-		Synpcc7942_1508	0.83	-0.1
1,559,090	-		Synpcc7942_1508	0.83	-1.3
1,559,162	-				-0.5
1,559,163	-				+1.5
1,559,165	+				+0.2
1,559,173	+				-1.2
1,559,173	-				-2.9
1,559,231	-				+1.4
1,559,270	-				+0.2
1,559,324	+				-0.1