Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1242

Experiment: Doxycycline hyclate 0.00078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.00078125 mg/ml
1,265,157	+				-2.1
1,265,215	+	nirB	Synpcc7942_1241	0.12	+0.6
1,265,434	-	nirB	Synpcc7942_1241	0.33	-0.1
1,265,508	+	nirB	Synpcc7942_1241	0.40	-2.4
1,265,612	-	nirB	Synpcc7942_1241	0.50	-0.9
1,265,629	-	nirB	Synpcc7942_1241	0.52	-2.7
1,265,710	-	nirB	Synpcc7942_1241	0.59	-2.2
1,265,710	-	nirB	Synpcc7942_1241	0.59	-1.3
1,265,720	-	nirB	Synpcc7942_1241	0.60	-1.4
1,265,828	-	nirB	Synpcc7942_1241	0.70	-2.3
1,266,002	+	nirB	Synpcc7942_1241	0.87	-1.1
1,266,007	+	nirB	Synpcc7942_1241	0.88	-0.1
1,266,054	+				-1.1
1,266,056	+				+2.1
1,266,062	-				-1.1
1,266,064	-				-2.6
1,266,104	+				-0.7
1,266,104	+				+0.5
1,266,111	-				+0.9
1,266,111	-				-2.4
1,266,132	+				-1.8
1,266,142	+				-4.4
1,266,150	-				-2.2
1,266,191	+				-1.1
1,266,232	+	ntcB	Synpcc7942_1242	0.11	-1.1
1,266,232	+	ntcB	Synpcc7942_1242	0.11	-0.5
1,266,239	+	ntcB	Synpcc7942_1242	0.12	-4.3
1,266,247	-	ntcB	Synpcc7942_1242	0.13	-1.3
1,266,261	-	ntcB	Synpcc7942_1242	0.14	-4.1
1,266,263	+	ntcB	Synpcc7942_1242	0.15	-1.4
1,266,276	-	ntcB	Synpcc7942_1242	0.16	+0.3
1,266,354	-	ntcB	Synpcc7942_1242	0.24	-1.7
1,266,482	+	ntcB	Synpcc7942_1242	0.38	-3.1
1,266,503	-	ntcB	Synpcc7942_1242	0.40	-2.3
1,266,632	+	ntcB	Synpcc7942_1242	0.54	-0.1
1,266,650	-	ntcB	Synpcc7942_1242	0.56	-1.3
1,266,677	-	ntcB	Synpcc7942_1242	0.59	-1.1
1,266,686	-	ntcB	Synpcc7942_1242	0.60	-0.1
1,266,739	-	ntcB	Synpcc7942_1242	0.66	-1.9
1,266,768	+	ntcB	Synpcc7942_1242	0.69	+0.2
1,266,776	-	ntcB	Synpcc7942_1242	0.70	-1.8
1,266,808	-	ntcB	Synpcc7942_1242	0.73	-4.6
1,266,840	+	ntcB	Synpcc7942_1242	0.77	-1.1
1,266,862	-	ntcB	Synpcc7942_1242	0.79	-2.4
1,266,892	-	ntcB	Synpcc7942_1242	0.82	-0.1
1,266,909	+	ntcB	Synpcc7942_1242	0.84	+1.3
1,266,909	+	ntcB	Synpcc7942_1242	0.84	+1.5
1,266,912	-	ntcB	Synpcc7942_1242	0.84	-1.4
1,266,917	-	ntcB	Synpcc7942_1242	0.85	-3.6
1,266,938	+	ntcB	Synpcc7942_1242	0.87	-1.4
1,266,948	+	ntcB	Synpcc7942_1242	0.88	-0.8
1,266,948	+	ntcB	Synpcc7942_1242	0.88	-1.7
1,266,994	+				-0.1
1,267,051	+				-0.8
1,267,051	+				-0.1
1,267,051	+				+1.1
1,267,051	+				-0.7
1,267,051	+				-1.7
1,267,051	+				+0.9
1,267,051	+				+0.8
1,267,059	-				+1.2
1,267,059	-				+1.0
1,267,059	-				-0.5
1,267,059	-				-1.1
1,267,059	-				-0.1
1,267,059	-				+1.5
1,267,059	-				-2.4
1,267,059	-				-2.4
1,267,059	-				+2.7
1,267,070	-				-2.7
1,267,079	-				-2.1
1,267,106	+				-0.7
1,267,143	+				-1.3
1,267,143	+				+0.9
1,267,143	+				+0.9
1,267,143	+				-1.7
1,267,143	+				-0.4
1,267,151	-				+2.7
1,267,151	-				+0.8
1,267,151	-				+0.3
1,267,151	-				+0.5
1,267,153	+				+0.8
1,267,178	+				+1.8
1,267,183	-				+1.2
1,267,186	-				+1.5
1,267,186	-				+1.3
1,267,188	-				+0.4
1,267,211	+				-0.7
1,267,219	-				+1.4
1,267,223	-				+0.2
1,267,226	-				-0.6
1,267,228	+				+1.7
1,267,228	+				+0.5
1,267,244	+				-0.4
1,267,254	+				+1.2
1,267,279	-				+0.8
1,267,286	+				+0.2
1,267,289	-				-0.8
1,267,305	+				+0.6
1,267,306	+				+1.4
1,267,306	+				-2.7
1,267,306	+				+2.4
1,267,306	+				+0.2
1,267,306	+				-0.1
1,267,306	+				+0.2
1,267,311	+				+1.1
1,267,314	-				+0.4
1,267,314	-				+1.0
1,267,314	-				+2.2
1,267,314	-				+1.4
1,267,329	+				-0.1
1,267,329	+				+0.0
1,267,329	+				-1.4
1,267,329	+				-0.7
1,267,337	-				-1.1
1,267,337	-				+0.6
1,267,337	-				+1.3
1,267,342	-				-2.4
1,267,344	-				+0.9
1,267,347	+				-2.1
1,267,377	-				-0.1
1,267,382	-				-0.0
1,267,382	-				-0.1
1,267,445	+				+0.1
1,267,453	-				+0.5
1,267,453	-				-0.3
1,267,453	-				+0.6
1,267,453	-				-0.6
1,267,463	-				-0.1
1,267,466	+				+0.5
1,267,469	-				+1.1
1,267,484	+				+1.8
1,267,484	+				+0.5
1,267,514	+		Synpcc7942_1243	0.13	+2.0
1,267,514	+		Synpcc7942_1243	0.13	-0.9
1,267,514	+				+0.9
1,267,522	-		Synpcc7942_1243	0.14	+0.9
1,267,522	-		Synpcc7942_1243	0.14	+0.2
1,267,522	-				+1.9
1,267,534	+		Synpcc7942_1243	0.16	-1.5
1,267,566	+		Synpcc7942_1243	0.21	+0.5
1,267,571	+		Synpcc7942_1243	0.21	-0.5
1,267,574	-		Synpcc7942_1243	0.22	-1.7
1,267,582	+		Synpcc7942_1243	0.23	+1.9
1,267,587	+		Synpcc7942_1243	0.24	-0.3
1,267,618	+		Synpcc7942_1243	0.28	+1.9
1,267,641	+		Synpcc7942_1243	0.31	+0.4
1,267,650	+		Synpcc7942_1243	0.33	+2.1
1,267,651	+		Synpcc7942_1243	0.33	-2.1
1,267,664	-		Synpcc7942_1243	0.35	-1.5
1,267,664	-		Synpcc7942_1243	0.35	+2.2
1,267,675	+		Synpcc7942_1243	0.36	-0.8
1,267,689	+		Synpcc7942_1243	0.38	+3.1
1,267,721	-		Synpcc7942_1243	0.43	-0.4
1,267,742	-		Synpcc7942_1243	0.46	-0.1
1,267,742	-		Synpcc7942_1243	0.46	+0.5
1,267,742	-		Synpcc7942_1243	0.46	+2.7
1,267,742	-		Synpcc7942_1243	0.46	+1.1
1,267,747	-				+1.9
1,267,763	+		Synpcc7942_1243	0.49	-1.9
1,267,776	+		Synpcc7942_1243	0.51	-0.6
1,267,777	+		Synpcc7942_1243	0.51	+0.9
1,267,778	-		Synpcc7942_1243	0.51	+0.4
1,267,778	-		Synpcc7942_1243	0.51	+1.1
1,267,782	+		Synpcc7942_1243	0.52	+2.2
1,267,782	+		Synpcc7942_1243	0.52	+1.5
1,267,812	+		Synpcc7942_1243	0.56	+0.2
1,267,827	-		Synpcc7942_1243	0.58	-0.1
1,267,827	-		Synpcc7942_1243	0.58	+0.7
1,267,881	+		Synpcc7942_1243	0.66	+1.5
1,267,881	-		Synpcc7942_1243	0.66	-0.6
1,267,886	+		Synpcc7942_1243	0.67	+0.9
1,267,886	+		Synpcc7942_1243	0.67	-0.2
1,267,886	+		Synpcc7942_1243	0.67	+0.3
1,267,893	+		Synpcc7942_1243	0.68	+0.6
1,267,894	-		Synpcc7942_1243	0.68	+0.6
1,267,899	-		Synpcc7942_1243	0.69	+0.7
1,267,901	+		Synpcc7942_1243	0.69	+0.5
1,267,937	-		Synpcc7942_1243	0.74	-0.5
1,267,952	+		Synpcc7942_1243	0.76	-0.1
1,267,960	-		Synpcc7942_1243	0.77	+0.3
1,267,975	+		Synpcc7942_1243	0.79	-0.8
1,267,989	-		Synpcc7942_1243	0.81	+1.3
1,268,014	+		Synpcc7942_1243	0.85	+2.7
1,268,017	+		Synpcc7942_1243	0.85	-1.3
1,268,017	+		Synpcc7942_1243	0.85	-0.9
1,268,020	-				+0.9
1,268,022	-		Synpcc7942_1243	0.86	+0.3
1,268,025	-		Synpcc7942_1243	0.87	+1.1
1,268,027	-		Synpcc7942_1243	0.87	+0.7
1,268,037	+		Synpcc7942_1243	0.88	+1.9
1,268,037	+		Synpcc7942_1243	0.88	-0.4
1,268,040	-		Synpcc7942_1243	0.89	-0.2
1,268,045	-		Synpcc7942_1243	0.90	+1.1
1,268,045	-		Synpcc7942_1243	0.90	-0.4
1,268,046	-		Synpcc7942_1243	0.90	+0.3
1,268,056	-				-0.1