Experiment: Doxycycline hyclate 0.00078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0622 and trxB are separated by 59 nucleotides trxB and ldpA are separated by 9 nucleotides
Synpcc7942_0622: Synpcc7942_0622 - ATPase, at 611,915 to 613,912
_0622
Synpcc7942_0623: trxB - thioredoxin reductase, at 613,972 to 615,351
trxB
Synpcc7942_0624: ldpA - light dependent period, at 615,361 to 616,419
ldpA
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 613.218 kb on + strand, within Synpcc7942_0622 at 613.223 kb on - strand, within Synpcc7942_0622 at 613.241 kb on - strand, within Synpcc7942_0622 at 613.248 kb on - strand, within Synpcc7942_0622 at 613.291 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.490 kb on - strand, within Synpcc7942_0622 at 613.519 kb on + strand, within Synpcc7942_0622 at 613.524 kb on + strand, within Synpcc7942_0622 at 613.527 kb on + strand, within Synpcc7942_0622 at 613.528 kb on - strand, within Synpcc7942_0622 at 613.626 kb on + strand, within Synpcc7942_0622 at 613.642 kb on - strand, within Synpcc7942_0622 at 613.770 kb on - strand at 613.811 kb on - strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.823 kb on - strand at 613.866 kb on - strand at 613.894 kb on + strand at 613.907 kb on + strand at 613.916 kb on + strand at 613.932 kb on - strand at 614.041 kb on + strand at 614.042 kb on - strand at 614.067 kb on - strand at 614.067 kb on - strand at 614.106 kb on + strand at 614.125 kb on - strand, within trxB at 614.142 kb on + strand, within trxB at 614.159 kb on - strand, within trxB at 614.170 kb on - strand, within trxB at 614.180 kb on - strand, within trxB at 614.187 kb on + strand, within trxB at 614.207 kb on + strand, within trxB at 614.214 kb on + strand, within trxB at 614.337 kb on + strand, within trxB at 614.394 kb on + strand at 614.606 kb on - strand, within trxB at 614.610 kb on + strand, within trxB at 614.622 kb on + strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.780 kb on - strand, within trxB at 614.821 kb on + strand, within trxB at 614.899 kb on - strand, within trxB at 614.966 kb on - strand, within trxB at 615.004 kb on + strand, within trxB at 615.034 kb on - strand, within trxB at 615.044 kb on - strand, within trxB at 615.046 kb on - strand, within trxB at 615.048 kb on + strand, within trxB at 615.048 kb on + strand, within trxB at 615.095 kb on - strand, within trxB at 615.097 kb on + strand, within trxB at 615.130 kb on - strand, within trxB at 615.166 kb on + strand, within trxB at 615.174 kb on - strand, within trxB at 615.174 kb on - strand, within trxB at 615.242 kb on + strand at 615.261 kb on - strand at 615.264 kb on + strand at 615.264 kb on + strand at 615.344 kb on + strand at 615.351 kb on + strand at 615.353 kb on + strand at 615.353 kb on + strand at 615.386 kb on + strand at 615.396 kb on - strand at 615.404 kb on + strand at 615.467 kb on + strand, within ldpA at 615.467 kb on + strand, within ldpA at 615.474 kb on - strand, within ldpA at 615.475 kb on - strand, within ldpA at 615.519 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.658 kb on - strand, within ldpA at 615.662 kb on + strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.751 kb on + strand, within ldpA at 615.786 kb on + strand, within ldpA at 615.902 kb on + strand, within ldpA at 615.975 kb on + strand, within ldpA at 615.983 kb on - strand, within ldpA at 616.075 kb on - strand, within ldpA at 616.089 kb on - strand, within ldpA at 616.093 kb on + strand, within ldpA at 616.195 kb on + strand, within ldpA at 616.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.00078125 mg/ml remove 613,218 + Synpcc7942_0622 0.65 -1.8 613,223 - Synpcc7942_0622 0.65 -1.2 613,241 - Synpcc7942_0622 0.66 -2.2 613,248 - Synpcc7942_0622 0.67 -3.4 613,291 - Synpcc7942_0622 0.69 -3.0 613,467 - Synpcc7942_0622 0.78 -2.2 613,467 - Synpcc7942_0622 0.78 -1.5 613,490 - Synpcc7942_0622 0.79 -1.8 613,519 + Synpcc7942_0622 0.80 -3.0 613,524 + Synpcc7942_0622 0.81 -0.2 613,527 + Synpcc7942_0622 0.81 -2.5 613,528 - Synpcc7942_0622 0.81 -1.4 613,626 + Synpcc7942_0622 0.86 -4.3 613,642 - Synpcc7942_0622 0.86 -1.2 613,770 - -2.6 613,811 - -2.8 613,815 + -2.5 613,815 + -4.2 613,815 + -2.5 613,823 - -1.2 613,866 - +0.2 613,894 + +0.3 613,907 + +0.5 613,916 + -0.8 613,932 - +0.2 614,041 + +0.4 614,042 - -2.0 614,067 - -1.8 614,067 - -3.5 614,106 + -1.2 614,125 - trxB Synpcc7942_0623 0.11 +0.4 614,142 + trxB Synpcc7942_0623 0.12 -2.5 614,159 - trxB Synpcc7942_0623 0.14 -0.8 614,170 - trxB Synpcc7942_0623 0.14 -2.0 614,180 - trxB Synpcc7942_0623 0.15 -1.2 614,187 + trxB Synpcc7942_0623 0.16 +0.2 614,207 + trxB Synpcc7942_0623 0.17 -0.8 614,214 + trxB Synpcc7942_0623 0.18 -2.2 614,337 + trxB Synpcc7942_0623 0.26 -1.2 614,394 + -0.2 614,606 - trxB Synpcc7942_0623 0.46 -0.2 614,610 + trxB Synpcc7942_0623 0.46 -2.2 614,622 + trxB Synpcc7942_0623 0.47 -0.2 614,630 - trxB Synpcc7942_0623 0.48 -1.8 614,630 - trxB Synpcc7942_0623 0.48 -2.8 614,630 - trxB Synpcc7942_0623 0.48 -1.5 614,630 - trxB Synpcc7942_0623 0.48 -1.2 614,780 - trxB Synpcc7942_0623 0.59 -2.2 614,821 + trxB Synpcc7942_0623 0.62 -1.8 614,899 - trxB Synpcc7942_0623 0.67 -1.9 614,966 - trxB Synpcc7942_0623 0.72 -2.2 615,004 + trxB Synpcc7942_0623 0.75 -1.8 615,034 - trxB Synpcc7942_0623 0.77 -2.1 615,044 - trxB Synpcc7942_0623 0.78 -0.2 615,046 - trxB Synpcc7942_0623 0.78 -3.3 615,048 + trxB Synpcc7942_0623 0.78 -2.5 615,048 + trxB Synpcc7942_0623 0.78 -1.4 615,095 - trxB Synpcc7942_0623 0.81 -1.2 615,097 + trxB Synpcc7942_0623 0.82 -1.8 615,130 - trxB Synpcc7942_0623 0.84 -1.4 615,166 + trxB Synpcc7942_0623 0.87 -2.3 615,174 - trxB Synpcc7942_0623 0.87 -1.8 615,174 - trxB Synpcc7942_0623 0.87 -1.9 615,242 + +0.3 615,261 - -1.8 615,264 + -0.2 615,264 + -2.5 615,344 + +0.6 615,351 + -0.2 615,353 + -1.8 615,353 + -0.5 615,386 + -2.6 615,396 - +1.8 615,404 + -1.8 615,467 + ldpA Synpcc7942_0624 0.10 -2.8 615,467 + ldpA Synpcc7942_0624 0.10 -1.2 615,474 - ldpA Synpcc7942_0624 0.11 -1.5 615,475 - ldpA Synpcc7942_0624 0.11 +0.4 615,519 + ldpA Synpcc7942_0624 0.15 +0.5 615,593 + ldpA Synpcc7942_0624 0.22 -1.9 615,593 + ldpA Synpcc7942_0624 0.22 -3.9 615,658 - ldpA Synpcc7942_0624 0.28 -0.2 615,662 + ldpA Synpcc7942_0624 0.28 -2.2 615,670 - ldpA Synpcc7942_0624 0.29 -0.8 615,670 - ldpA Synpcc7942_0624 0.29 -3.0 615,670 - ldpA Synpcc7942_0624 0.29 -2.0 615,751 + ldpA Synpcc7942_0624 0.37 -1.8 615,786 + ldpA Synpcc7942_0624 0.40 -0.2 615,902 + ldpA Synpcc7942_0624 0.51 -2.8 615,975 + ldpA Synpcc7942_0624 0.58 -2.2 615,983 - ldpA Synpcc7942_0624 0.59 -1.8 616,075 - ldpA Synpcc7942_0624 0.67 -2.2 616,089 - ldpA Synpcc7942_0624 0.69 -3.2 616,093 + ldpA Synpcc7942_0624 0.69 -2.5 616,195 + ldpA Synpcc7942_0624 0.79 -4.4 616,321 + -3.2
Or see this region's nucleotide sequence