Experiment: Doxycycline hyclate 0.00078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0621 and Synpcc7942_0622 are separated by 21 nucleotides Synpcc7942_0622 and trxB are separated by 59 nucleotides
Synpcc7942_0621: Synpcc7942_0621 - hypothetical protein, at 610,715 to 611,893
_0621
Synpcc7942_0622: Synpcc7942_0622 - ATPase, at 611,915 to 613,912
_0622
Synpcc7942_0623: trxB - thioredoxin reductase, at 613,972 to 615,351
trxB
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 610.939 kb on + strand, within Synpcc7942_0621 at 610.946 kb on - strand, within Synpcc7942_0621 at 610.979 kb on + strand, within Synpcc7942_0621 at 611.008 kb on + strand, within Synpcc7942_0621 at 611.016 kb on - strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.048 kb on - strand, within Synpcc7942_0621 at 611.051 kb on + strand, within Synpcc7942_0621 at 611.069 kb on - strand, within Synpcc7942_0621 at 611.137 kb on - strand, within Synpcc7942_0621 at 611.160 kb on - strand, within Synpcc7942_0621 at 611.192 kb on + strand, within Synpcc7942_0621 at 611.195 kb on - strand, within Synpcc7942_0621 at 611.205 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand at 611.219 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.229 kb on - strand, within Synpcc7942_0621 at 611.261 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.325 kb on + strand, within Synpcc7942_0621 at 611.327 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.354 kb on + strand, within Synpcc7942_0621 at 611.360 kb on + strand, within Synpcc7942_0621 at 611.368 kb on + strand, within Synpcc7942_0621 at 611.423 kb on - strand, within Synpcc7942_0621 at 611.437 kb on + strand, within Synpcc7942_0621 at 611.445 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.473 kb on + strand, within Synpcc7942_0621 at 611.473 kb on - strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.490 kb on + strand at 611.491 kb on - strand, within Synpcc7942_0621 at 611.511 kb on - strand, within Synpcc7942_0621 at 611.517 kb on + strand, within Synpcc7942_0621 at 611.530 kb on - strand, within Synpcc7942_0621 at 611.539 kb on + strand, within Synpcc7942_0621 at 611.546 kb on + strand, within Synpcc7942_0621 at 611.630 kb on + strand, within Synpcc7942_0621 at 611.645 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.715 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.808 kb on + strand at 611.862 kb on - strand at 611.864 kb on + strand at 611.872 kb on - strand at 611.884 kb on - strand at 611.886 kb on + strand at 611.889 kb on + strand at 611.894 kb on - strand at 611.896 kb on - strand at 611.915 kb on - strand at 611.973 kb on + strand at 611.992 kb on + strand at 612.072 kb on + strand at 612.268 kb on + strand, within Synpcc7942_0622 at 612.328 kb on + strand, within Synpcc7942_0622 at 612.364 kb on + strand, within Synpcc7942_0622 at 612.441 kb on - strand, within Synpcc7942_0622 at 612.458 kb on + strand, within Synpcc7942_0622 at 612.591 kb on + strand, within Synpcc7942_0622 at 612.599 kb on - strand, within Synpcc7942_0622 at 612.644 kb on - strand, within Synpcc7942_0622 at 612.653 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.789 kb on - strand, within Synpcc7942_0622 at 612.801 kb on + strand, within Synpcc7942_0622 at 613.218 kb on + strand, within Synpcc7942_0622 at 613.223 kb on - strand, within Synpcc7942_0622 at 613.241 kb on - strand, within Synpcc7942_0622 at 613.248 kb on - strand, within Synpcc7942_0622 at 613.291 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.490 kb on - strand, within Synpcc7942_0622 at 613.519 kb on + strand, within Synpcc7942_0622 at 613.524 kb on + strand, within Synpcc7942_0622 at 613.527 kb on + strand, within Synpcc7942_0622 at 613.528 kb on - strand, within Synpcc7942_0622 at 613.626 kb on + strand, within Synpcc7942_0622 at 613.642 kb on - strand, within Synpcc7942_0622 at 613.770 kb on - strand at 613.811 kb on - strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.823 kb on - strand at 613.866 kb on - strand at 613.894 kb on + strand at 613.907 kb on + strand at 613.916 kb on + strand at 613.932 kb on - strand at 614.041 kb on + strand at 614.042 kb on - strand at 614.067 kb on - strand at 614.067 kb on - strand at 614.106 kb on + strand at 614.125 kb on - strand, within trxB at 614.142 kb on + strand, within trxB at 614.159 kb on - strand, within trxB at 614.170 kb on - strand, within trxB at 614.180 kb on - strand, within trxB at 614.187 kb on + strand, within trxB at 614.207 kb on + strand, within trxB at 614.214 kb on + strand, within trxB at 614.337 kb on + strand, within trxB at 614.394 kb on + strand at 614.606 kb on - strand, within trxB at 614.610 kb on + strand, within trxB at 614.622 kb on + strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.780 kb on - strand, within trxB at 614.821 kb on + strand, within trxB at 614.899 kb on - strand, within trxB
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.00078125 mg/ml remove 610,939 + Synpcc7942_0621 0.19 -1.5 610,946 - Synpcc7942_0621 0.20 +0.2 610,979 + Synpcc7942_0621 0.22 -0.6 611,008 + Synpcc7942_0621 0.25 -0.2 611,016 - Synpcc7942_0621 0.26 +0.3 611,028 + Synpcc7942_0621 0.27 +1.4 611,028 + Synpcc7942_0621 0.27 +0.4 611,040 + Synpcc7942_0621 0.28 -0.2 611,040 + Synpcc7942_0621 0.28 -0.8 611,048 - Synpcc7942_0621 0.28 +0.2 611,051 + Synpcc7942_0621 0.28 -0.7 611,069 - Synpcc7942_0621 0.30 +0.7 611,137 - Synpcc7942_0621 0.36 -1.0 611,160 - Synpcc7942_0621 0.38 -2.3 611,192 + Synpcc7942_0621 0.40 +0.2 611,195 - Synpcc7942_0621 0.41 +0.8 611,205 + Synpcc7942_0621 0.42 +0.4 611,219 + Synpcc7942_0621 0.43 +1.0 611,219 + Synpcc7942_0621 0.43 +0.3 611,219 + Synpcc7942_0621 0.43 -0.6 611,219 + Synpcc7942_0621 0.43 -0.4 611,219 + +1.8 611,219 + Synpcc7942_0621 0.43 +0.3 611,225 + Synpcc7942_0621 0.43 +1.4 611,225 + Synpcc7942_0621 0.43 +1.4 611,227 - Synpcc7942_0621 0.43 -0.5 611,227 - Synpcc7942_0621 0.43 -1.2 611,227 - Synpcc7942_0621 0.43 -0.5 611,227 - Synpcc7942_0621 0.43 -2.2 611,227 - Synpcc7942_0621 0.43 +1.1 611,227 - Synpcc7942_0621 0.43 -1.8 611,227 - Synpcc7942_0621 0.43 -2.2 611,227 - Synpcc7942_0621 0.43 +0.0 611,227 - Synpcc7942_0621 0.43 -1.8 611,227 - Synpcc7942_0621 0.43 -0.2 611,227 - Synpcc7942_0621 0.43 +0.0 611,227 - Synpcc7942_0621 0.43 -1.2 611,227 - Synpcc7942_0621 0.43 +0.5 611,229 - Synpcc7942_0621 0.44 +0.6 611,261 + Synpcc7942_0621 0.46 +1.8 611,306 + Synpcc7942_0621 0.50 -1.1 611,306 + Synpcc7942_0621 0.50 -1.8 611,306 + Synpcc7942_0621 0.50 -0.8 611,314 - Synpcc7942_0621 0.51 +0.8 611,314 - Synpcc7942_0621 0.51 -1.4 611,321 - Synpcc7942_0621 0.51 +1.6 611,321 - Synpcc7942_0621 0.51 -1.2 611,321 - Synpcc7942_0621 0.51 -0.5 611,325 + Synpcc7942_0621 0.52 -0.6 611,327 + Synpcc7942_0621 0.52 -0.2 611,353 + Synpcc7942_0621 0.54 -1.2 611,353 + Synpcc7942_0621 0.54 +0.6 611,354 + Synpcc7942_0621 0.54 +0.0 611,360 + Synpcc7942_0621 0.55 +0.4 611,368 + Synpcc7942_0621 0.55 -1.0 611,423 - Synpcc7942_0621 0.60 +0.3 611,437 + Synpcc7942_0621 0.61 -1.2 611,445 - Synpcc7942_0621 0.62 -0.3 611,452 - Synpcc7942_0621 0.63 -1.0 611,452 - Synpcc7942_0621 0.63 -0.2 611,473 + Synpcc7942_0621 0.64 -2.2 611,473 - Synpcc7942_0621 0.64 -2.2 611,475 + Synpcc7942_0621 0.64 +0.4 611,475 + Synpcc7942_0621 0.64 +3.3 611,475 + Synpcc7942_0621 0.64 +0.3 611,490 + -2.2 611,491 - Synpcc7942_0621 0.66 +1.2 611,511 - Synpcc7942_0621 0.68 +0.0 611,517 + Synpcc7942_0621 0.68 +1.1 611,530 - Synpcc7942_0621 0.69 +1.2 611,539 + Synpcc7942_0621 0.70 -0.3 611,546 + Synpcc7942_0621 0.70 -2.2 611,630 + Synpcc7942_0621 0.78 -1.8 611,645 + Synpcc7942_0621 0.79 -0.5 611,676 + Synpcc7942_0621 0.82 -0.2 611,676 + Synpcc7942_0621 0.82 -0.2 611,684 - Synpcc7942_0621 0.82 -1.2 611,684 - Synpcc7942_0621 0.82 -0.2 611,715 - Synpcc7942_0621 0.85 -0.2 611,757 - Synpcc7942_0621 0.88 -1.8 611,757 - Synpcc7942_0621 0.88 -1.5 611,808 + +1.4 611,862 - +1.2 611,864 + +0.2 611,872 - +0.2 611,884 - -0.9 611,886 + +1.2 611,889 + +0.2 611,894 - -0.2 611,896 - -0.1 611,915 - +0.0 611,973 + -1.8 611,992 + -2.0 612,072 + -1.8 612,268 + Synpcc7942_0622 0.18 -3.0 612,328 + Synpcc7942_0622 0.21 -1.5 612,364 + Synpcc7942_0622 0.22 -3.8 612,441 - Synpcc7942_0622 0.26 -2.8 612,458 + Synpcc7942_0622 0.27 -1.8 612,591 + Synpcc7942_0622 0.34 -2.5 612,599 - Synpcc7942_0622 0.34 -2.8 612,644 - Synpcc7942_0622 0.36 -3.2 612,653 + Synpcc7942_0622 0.37 -2.2 612,726 + Synpcc7942_0622 0.41 -4.1 612,726 + Synpcc7942_0622 0.41 -3.5 612,789 - Synpcc7942_0622 0.44 -0.2 612,801 + Synpcc7942_0622 0.44 -3.2 613,218 + Synpcc7942_0622 0.65 -1.8 613,223 - Synpcc7942_0622 0.65 -1.2 613,241 - Synpcc7942_0622 0.66 -2.2 613,248 - Synpcc7942_0622 0.67 -3.4 613,291 - Synpcc7942_0622 0.69 -3.0 613,467 - Synpcc7942_0622 0.78 -2.2 613,467 - Synpcc7942_0622 0.78 -1.5 613,490 - Synpcc7942_0622 0.79 -1.8 613,519 + Synpcc7942_0622 0.80 -3.0 613,524 + Synpcc7942_0622 0.81 -0.2 613,527 + Synpcc7942_0622 0.81 -2.5 613,528 - Synpcc7942_0622 0.81 -1.4 613,626 + Synpcc7942_0622 0.86 -4.3 613,642 - Synpcc7942_0622 0.86 -1.2 613,770 - -2.6 613,811 - -2.8 613,815 + -2.5 613,815 + -4.2 613,815 + -2.5 613,823 - -1.2 613,866 - +0.2 613,894 + +0.3 613,907 + +0.5 613,916 + -0.8 613,932 - +0.2 614,041 + +0.4 614,042 - -2.0 614,067 - -1.8 614,067 - -3.5 614,106 + -1.2 614,125 - trxB Synpcc7942_0623 0.11 +0.4 614,142 + trxB Synpcc7942_0623 0.12 -2.5 614,159 - trxB Synpcc7942_0623 0.14 -0.8 614,170 - trxB Synpcc7942_0623 0.14 -2.0 614,180 - trxB Synpcc7942_0623 0.15 -1.2 614,187 + trxB Synpcc7942_0623 0.16 +0.2 614,207 + trxB Synpcc7942_0623 0.17 -0.8 614,214 + trxB Synpcc7942_0623 0.18 -2.2 614,337 + trxB Synpcc7942_0623 0.26 -1.2 614,394 + -0.2 614,606 - trxB Synpcc7942_0623 0.46 -0.2 614,610 + trxB Synpcc7942_0623 0.46 -2.2 614,622 + trxB Synpcc7942_0623 0.47 -0.2 614,630 - trxB Synpcc7942_0623 0.48 -1.8 614,630 - trxB Synpcc7942_0623 0.48 -2.8 614,630 - trxB Synpcc7942_0623 0.48 -1.5 614,630 - trxB Synpcc7942_0623 0.48 -1.2 614,780 - trxB Synpcc7942_0623 0.59 -2.2 614,821 + trxB Synpcc7942_0623 0.62 -1.8 614,899 - trxB Synpcc7942_0623 0.67 -1.9
Or see this region's nucleotide sequence