Experiment: Doxycycline hyclate 0.00078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ychF and Synpcc7942_0555 are separated by 104 nucleotides Synpcc7942_0555 and srrB overlap by 4 nucleotides srrB and Synpcc7942_0557 are separated by 194 nucleotides Synpcc7942_0557 and Synpcc7942_0558 are separated by 77 nucleotides
Synpcc7942_0554: ychF - translation-associated GTPase, at 536,594 to 537,685
ychF
Synpcc7942_0555: Synpcc7942_0555 - zinc metalloprotease, at 537,790 to 538,509
_0555
Synpcc7942_0556: srrB - two component transcriptional regulator, winged helix family, at 538,506 to 539,219
srrB
Synpcc7942_0557: Synpcc7942_0557 - hypothetical protein, at 539,414 to 539,605
_0557
Synpcc7942_0558: Synpcc7942_0558 - hypothetical protein, at 539,683 to 540,297
_0558
Position (kb) 538
539
540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 537.510 kb on + strand, within ychF at 537.517 kb on - strand, within ychF at 537.537 kb on + strand, within ychF at 537.544 kb on - strand, within ychF at 537.574 kb on + strand, within ychF at 537.574 kb on + strand, within ychF at 537.579 kb on + strand at 537.586 kb on + strand at 537.594 kb on - strand at 537.634 kb on + strand at 537.642 kb on - strand at 537.701 kb on - strand at 537.711 kb on + strand at 537.726 kb on + strand at 537.741 kb on + strand at 537.741 kb on + strand at 537.751 kb on + strand at 537.831 kb on - strand at 537.847 kb on + strand at 537.847 kb on + strand at 537.868 kb on - strand, within Synpcc7942_0555 at 537.870 kb on + strand, within Synpcc7942_0555 at 537.870 kb on + strand, within Synpcc7942_0555 at 537.878 kb on - strand at 537.924 kb on + strand, within Synpcc7942_0555 at 537.932 kb on - strand, within Synpcc7942_0555 at 537.932 kb on - strand, within Synpcc7942_0555 at 537.948 kb on - strand, within Synpcc7942_0555 at 538.080 kb on + strand, within Synpcc7942_0555 at 538.081 kb on + strand, within Synpcc7942_0555 at 538.082 kb on - strand, within Synpcc7942_0555 at 538.088 kb on + strand, within Synpcc7942_0555 at 538.088 kb on - strand, within Synpcc7942_0555 at 538.099 kb on + strand, within Synpcc7942_0555 at 538.102 kb on + strand, within Synpcc7942_0555 at 538.105 kb on + strand, within Synpcc7942_0555 at 538.113 kb on - strand, within Synpcc7942_0555 at 538.120 kb on + strand, within Synpcc7942_0555 at 538.163 kb on + strand, within Synpcc7942_0555 at 538.186 kb on - strand, within Synpcc7942_0555 at 538.186 kb on - strand, within Synpcc7942_0555 at 538.188 kb on + strand, within Synpcc7942_0555 at 538.196 kb on - strand, within Synpcc7942_0555 at 538.198 kb on - strand, within Synpcc7942_0555 at 538.256 kb on - strand, within Synpcc7942_0555 at 538.256 kb on - strand, within Synpcc7942_0555 at 538.257 kb on - strand, within Synpcc7942_0555 at 538.337 kb on + strand, within Synpcc7942_0555 at 538.337 kb on + strand, within Synpcc7942_0555 at 538.345 kb on - strand, within Synpcc7942_0555 at 538.345 kb on - strand, within Synpcc7942_0555 at 538.366 kb on + strand, within Synpcc7942_0555 at 538.431 kb on - strand, within Synpcc7942_0555 at 538.504 kb on + strand at 538.504 kb on + strand at 538.576 kb on + strand at 538.597 kb on + strand, within srrB at 538.605 kb on - strand at 538.634 kb on - strand, within srrB at 538.667 kb on + strand, within srrB at 538.736 kb on - strand, within srrB at 538.772 kb on - strand, within srrB at 538.776 kb on + strand at 538.821 kb on + strand, within srrB at 538.824 kb on - strand, within srrB at 538.834 kb on - strand at 538.854 kb on + strand, within srrB at 538.886 kb on + strand, within srrB at 538.894 kb on - strand, within srrB at 538.918 kb on + strand, within srrB at 538.955 kb on - strand at 538.992 kb on + strand, within srrB at 539.027 kb on + strand, within srrB at 539.029 kb on + strand, within srrB at 539.051 kb on + strand, within srrB at 539.051 kb on + strand at 539.092 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.105 kb on - strand, within srrB at 539.110 kb on - strand, within srrB at 539.133 kb on - strand, within srrB at 539.147 kb on - strand, within srrB at 539.184 kb on + strand at 539.184 kb on + strand at 539.194 kb on - strand at 539.216 kb on + strand at 539.224 kb on - strand at 539.229 kb on - strand at 539.229 kb on - strand at 539.239 kb on + strand at 539.241 kb on - strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.250 kb on + strand at 539.252 kb on - strand at 539.253 kb on + strand at 539.253 kb on + strand at 539.254 kb on - strand at 539.271 kb on - strand at 539.271 kb on - strand at 539.273 kb on + strand at 539.288 kb on - strand at 539.309 kb on + strand at 539.318 kb on + strand at 539.374 kb on - strand at 539.377 kb on + strand at 539.391 kb on - strand at 539.401 kb on + strand at 539.409 kb on + strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.414 kb on + strand at 539.459 kb on + strand, within Synpcc7942_0557 at 539.459 kb on + strand, within Synpcc7942_0557 at 539.467 kb on - strand, within Synpcc7942_0557 at 539.474 kb on - strand, within Synpcc7942_0557 at 539.626 kb on - strand at 539.638 kb on + strand at 539.646 kb on - strand at 539.670 kb on - strand at 539.670 kb on - strand at 539.714 kb on + strand at 539.742 kb on + strand at 539.801 kb on + strand, within Synpcc7942_0558 at 539.811 kb on - strand, within Synpcc7942_0558 at 539.835 kb on - strand, within Synpcc7942_0558 at 539.865 kb on + strand, within Synpcc7942_0558 at 539.960 kb on - strand, within Synpcc7942_0558 at 540.012 kb on + strand, within Synpcc7942_0558 at 540.059 kb on - strand, within Synpcc7942_0558 at 540.131 kb on + strand, within Synpcc7942_0558
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.00078125 mg/ml remove 537,510 + ychF Synpcc7942_0554 0.84 -1.4 537,517 - ychF Synpcc7942_0554 0.85 +0.4 537,537 + ychF Synpcc7942_0554 0.86 -3.1 537,544 - ychF Synpcc7942_0554 0.87 -0.5 537,574 + ychF Synpcc7942_0554 0.90 -0.1 537,574 + ychF Synpcc7942_0554 0.90 -1.4 537,579 + -1.7 537,586 + -1.7 537,594 - +0.1 537,634 + -0.7 537,642 - -1.9 537,701 - +0.8 537,711 + -0.1 537,726 + -1.5 537,741 + +1.1 537,741 + -1.1 537,751 + -1.3 537,831 - +0.9 537,847 + -2.1 537,847 + -2.1 537,868 - Synpcc7942_0555 0.11 -0.5 537,870 + Synpcc7942_0555 0.11 +1.1 537,870 + Synpcc7942_0555 0.11 +0.8 537,878 - +0.5 537,924 + Synpcc7942_0555 0.19 +0.5 537,932 - Synpcc7942_0555 0.20 +0.0 537,932 - Synpcc7942_0555 0.20 +1.8 537,948 - Synpcc7942_0555 0.22 +1.5 538,080 + Synpcc7942_0555 0.40 +1.3 538,081 + Synpcc7942_0555 0.40 +0.1 538,082 - Synpcc7942_0555 0.41 +0.6 538,088 + Synpcc7942_0555 0.41 +0.6 538,088 - Synpcc7942_0555 0.41 +0.8 538,099 + Synpcc7942_0555 0.43 +1.9 538,102 + Synpcc7942_0555 0.43 -0.9 538,105 + Synpcc7942_0555 0.44 -0.5 538,113 - Synpcc7942_0555 0.45 +0.3 538,120 + Synpcc7942_0555 0.46 -1.1 538,163 + Synpcc7942_0555 0.52 +1.9 538,186 - Synpcc7942_0555 0.55 -0.5 538,186 - Synpcc7942_0555 0.55 -0.4 538,188 + Synpcc7942_0555 0.55 -0.4 538,196 - Synpcc7942_0555 0.56 +1.7 538,198 - Synpcc7942_0555 0.57 +0.7 538,256 - Synpcc7942_0555 0.65 -0.2 538,256 - Synpcc7942_0555 0.65 -0.8 538,257 - Synpcc7942_0555 0.65 +1.5 538,337 + Synpcc7942_0555 0.76 +0.3 538,337 + Synpcc7942_0555 0.76 -0.1 538,345 - Synpcc7942_0555 0.77 +0.4 538,345 - Synpcc7942_0555 0.77 -0.1 538,366 + Synpcc7942_0555 0.80 -0.5 538,431 - Synpcc7942_0555 0.89 +1.1 538,504 + +0.7 538,504 + +1.9 538,576 + -0.5 538,597 + srrB Synpcc7942_0556 0.13 -2.9 538,605 - -0.1 538,634 - srrB Synpcc7942_0556 0.18 -2.3 538,667 + srrB Synpcc7942_0556 0.23 -1.7 538,736 - srrB Synpcc7942_0556 0.32 -2.1 538,772 - srrB Synpcc7942_0556 0.37 -1.1 538,776 + -2.4 538,821 + srrB Synpcc7942_0556 0.44 -1.1 538,824 - srrB Synpcc7942_0556 0.45 -0.8 538,834 - -0.1 538,854 + srrB Synpcc7942_0556 0.49 -1.0 538,886 + srrB Synpcc7942_0556 0.53 -1.1 538,894 - srrB Synpcc7942_0556 0.54 -0.3 538,918 + srrB Synpcc7942_0556 0.58 -0.1 538,955 - -0.1 538,992 + srrB Synpcc7942_0556 0.68 -1.9 539,027 + srrB Synpcc7942_0556 0.73 -1.9 539,029 + srrB Synpcc7942_0556 0.73 -2.1 539,051 + srrB Synpcc7942_0556 0.76 -2.9 539,051 + -1.7 539,092 + srrB Synpcc7942_0556 0.82 -0.6 539,096 + srrB Synpcc7942_0556 0.83 -1.7 539,096 + srrB Synpcc7942_0556 0.83 -1.4 539,105 - srrB Synpcc7942_0556 0.84 -3.9 539,110 - srrB Synpcc7942_0556 0.85 -0.5 539,133 - srrB Synpcc7942_0556 0.88 -2.1 539,147 - srrB Synpcc7942_0556 0.90 -0.1 539,184 + -0.1 539,184 + +0.1 539,194 - -3.3 539,216 + -0.5 539,224 - -2.4 539,229 - -1.0 539,229 - -1.7 539,239 + -0.1 539,241 - -1.0 539,244 + -2.4 539,244 + -0.5 539,244 + -1.1 539,250 + -1.1 539,252 - +0.9 539,253 + -1.9 539,253 + -3.1 539,254 - +1.5 539,271 - +0.4 539,271 - -0.1 539,273 + +1.2 539,288 - +1.3 539,309 + -0.7 539,318 + -2.1 539,374 - -2.9 539,377 + +0.2 539,391 - -0.9 539,401 + -2.4 539,409 + +0.4 539,409 - +0.3 539,409 - -0.6 539,409 - -0.1 539,414 + +0.2 539,459 + Synpcc7942_0557 0.23 -1.1 539,459 + Synpcc7942_0557 0.23 -0.7 539,467 - Synpcc7942_0557 0.28 -1.0 539,474 - Synpcc7942_0557 0.31 +0.1 539,626 - -1.7 539,638 + -0.7 539,646 - +1.5 539,670 - -1.3 539,670 - +0.5 539,714 + -2.1 539,742 + -2.1 539,801 + Synpcc7942_0558 0.19 -2.7 539,811 - Synpcc7942_0558 0.21 -0.1 539,835 - Synpcc7942_0558 0.25 -0.1 539,865 + Synpcc7942_0558 0.30 -1.9 539,960 - Synpcc7942_0558 0.45 +0.5 540,012 + Synpcc7942_0558 0.53 -2.1 540,059 - Synpcc7942_0558 0.61 +0.3 540,131 + Synpcc7942_0558 0.73 -2.9
Or see this region's nucleotide sequence