Experiment: Doxycycline hyclate 0.00078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psbK and Synpcc7942_0457 are separated by 215 nucleotides Synpcc7942_0457 and fghA are separated by 35 nucleotides fghA and Synpcc7942_0459 are separated by 5 nucleotides
Synpcc7942_0456: psbK - photosystem II reaction center protein PsbK precursor, at 445,209 to 445,346
psbK
Synpcc7942_0457: Synpcc7942_0457 - hypothetical protein, at 445,562 to 446,179
_0457
Synpcc7942_0458: fghA - Carboxylesterase, at 446,215 to 447,051
fghA
Synpcc7942_0459: Synpcc7942_0459 - glutathione-dependent formaldehyde dehydrogenase, at 447,057 to 448,166
_0459
Position (kb) 446
447
448 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 445.218 kb on + strand at 445.293 kb on - strand, within psbK at 445.349 kb on - strand at 445.356 kb on - strand at 445.364 kb on - strand at 445.395 kb on + strand at 445.446 kb on - strand at 445.573 kb on - strand at 445.583 kb on + strand at 445.593 kb on + strand at 445.601 kb on - strand at 445.641 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand at 445.670 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand, within Synpcc7942_0457 at 445.675 kb on + strand at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.681 kb on + strand, within Synpcc7942_0457 at 445.686 kb on + strand, within Synpcc7942_0457 at 445.689 kb on - strand, within Synpcc7942_0457 at 445.691 kb on - strand, within Synpcc7942_0457 at 445.755 kb on + strand, within Synpcc7942_0457 at 445.763 kb on - strand, within Synpcc7942_0457 at 445.771 kb on + strand, within Synpcc7942_0457 at 445.783 kb on + strand, within Synpcc7942_0457 at 445.790 kb on + strand, within Synpcc7942_0457 at 445.798 kb on - strand, within Synpcc7942_0457 at 445.799 kb on - strand, within Synpcc7942_0457 at 445.806 kb on + strand, within Synpcc7942_0457 at 445.814 kb on - strand, within Synpcc7942_0457 at 445.832 kb on + strand, within Synpcc7942_0457 at 445.874 kb on - strand, within Synpcc7942_0457 at 445.897 kb on + strand, within Synpcc7942_0457 at 445.900 kb on - strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.938 kb on + strand, within Synpcc7942_0457 at 445.941 kb on - strand, within Synpcc7942_0457 at 445.951 kb on - strand, within Synpcc7942_0457 at 445.988 kb on - strand, within Synpcc7942_0457 at 446.071 kb on + strand, within Synpcc7942_0457 at 446.120 kb on + strand at 446.169 kb on + strand at 446.169 kb on + strand at 446.185 kb on + strand at 446.200 kb on - strand at 446.234 kb on + strand at 446.242 kb on - strand at 446.287 kb on + strand at 446.318 kb on - strand, within fghA at 446.324 kb on - strand, within fghA at 446.337 kb on - strand, within fghA at 446.343 kb on + strand, within fghA at 446.453 kb on + strand, within fghA at 446.468 kb on - strand, within fghA at 446.477 kb on + strand, within fghA at 446.499 kb on - strand, within fghA at 446.507 kb on + strand, within fghA at 446.515 kb on - strand, within fghA at 446.533 kb on + strand, within fghA at 446.545 kb on + strand, within fghA at 446.553 kb on - strand, within fghA at 446.570 kb on + strand, within fghA at 446.578 kb on - strand, within fghA at 446.580 kb on + strand, within fghA at 446.588 kb on - strand, within fghA at 446.595 kb on - strand, within fghA at 446.665 kb on + strand, within fghA at 446.700 kb on + strand, within fghA at 446.708 kb on - strand, within fghA at 446.710 kb on - strand, within fghA at 446.741 kb on + strand, within fghA at 446.749 kb on - strand, within fghA at 446.782 kb on + strand, within fghA at 446.888 kb on + strand, within fghA at 446.896 kb on - strand, within fghA at 446.901 kb on - strand, within fghA at 446.901 kb on - strand, within fghA at 446.909 kb on + strand, within fghA at 446.917 kb on - strand, within fghA at 446.930 kb on - strand, within fghA at 446.930 kb on - strand, within fghA at 446.932 kb on - strand, within fghA at 446.947 kb on - strand, within fghA at 446.960 kb on - strand, within fghA at 446.965 kb on - strand, within fghA at 446.977 kb on + strand at 446.979 kb on + strand at 446.984 kb on + strand at 446.985 kb on - strand at 446.991 kb on + strand at 446.999 kb on - strand at 447.007 kb on - strand at 447.035 kb on + strand at 447.064 kb on - strand at 447.195 kb on - strand, within Synpcc7942_0459 at 447.203 kb on + strand, within Synpcc7942_0459 at 447.212 kb on - strand, within Synpcc7942_0459 at 447.219 kb on - strand, within Synpcc7942_0459 at 447.238 kb on + strand, within Synpcc7942_0459 at 447.238 kb on + strand, within Synpcc7942_0459 at 447.238 kb on + strand, within Synpcc7942_0459 at 447.238 kb on + strand, within Synpcc7942_0459 at 447.246 kb on - strand, within Synpcc7942_0459 at 447.259 kb on + strand, within Synpcc7942_0459 at 447.292 kb on + strand, within Synpcc7942_0459 at 447.327 kb on + strand, within Synpcc7942_0459 at 447.329 kb on - strand, within Synpcc7942_0459 at 447.342 kb on + strand, within Synpcc7942_0459 at 447.388 kb on - strand, within Synpcc7942_0459 at 447.413 kb on + strand, within Synpcc7942_0459 at 447.450 kb on - strand, within Synpcc7942_0459 at 447.474 kb on + strand, within Synpcc7942_0459 at 447.475 kb on + strand, within Synpcc7942_0459 at 447.560 kb on - strand, within Synpcc7942_0459 at 447.577 kb on - strand, within Synpcc7942_0459 at 447.579 kb on + strand, within Synpcc7942_0459 at 447.579 kb on + strand, within Synpcc7942_0459 at 447.579 kb on + strand, within Synpcc7942_0459 at 447.587 kb on - strand at 447.587 kb on - strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.635 kb on - strand, within Synpcc7942_0459 at 447.676 kb on + strand, within Synpcc7942_0459 at 447.677 kb on + strand, within Synpcc7942_0459 at 447.678 kb on - strand, within Synpcc7942_0459 at 447.683 kb on - strand, within Synpcc7942_0459 at 447.684 kb on - strand, within Synpcc7942_0459 at 447.689 kb on - strand, within Synpcc7942_0459 at 447.732 kb on + strand, within Synpcc7942_0459 at 447.733 kb on + strand, within Synpcc7942_0459 at 447.747 kb on + strand, within Synpcc7942_0459 at 447.765 kb on + strand, within Synpcc7942_0459 at 447.773 kb on - strand, within Synpcc7942_0459 at 447.788 kb on + strand, within Synpcc7942_0459 at 447.796 kb on - strand, within Synpcc7942_0459 at 447.813 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.854 kb on + strand, within Synpcc7942_0459 at 447.861 kb on - strand, within Synpcc7942_0459 at 447.868 kb on + strand, within Synpcc7942_0459 at 447.893 kb on + strand, within Synpcc7942_0459 at 447.911 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.940 kb on + strand, within Synpcc7942_0459 at 447.963 kb on + strand, within Synpcc7942_0459 at 447.992 kb on - strand, within Synpcc7942_0459 at 448.028 kb on + strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.042 kb on + strand, within Synpcc7942_0459 at 448.050 kb on - strand, within Synpcc7942_0459
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.00078125 mg/ml remove 445,218 + -2.1 445,293 - psbK Synpcc7942_0456 0.61 -1.1 445,349 - -0.5 445,356 - +1.4 445,364 - +0.9 445,395 + +0.6 445,446 - +0.6 445,573 - -0.3 445,583 + +0.7 445,593 + +1.8 445,601 - +0.4 445,641 + Synpcc7942_0457 0.13 +0.2 445,670 + Synpcc7942_0457 0.17 +1.4 445,670 + +0.9 445,670 + Synpcc7942_0457 0.17 +1.1 445,670 + Synpcc7942_0457 0.17 -0.5 445,675 + -1.1 445,678 - Synpcc7942_0457 0.19 +0.5 445,678 - Synpcc7942_0457 0.19 -1.2 445,678 - Synpcc7942_0457 0.19 -0.1 445,678 - Synpcc7942_0457 0.19 +0.8 445,681 + Synpcc7942_0457 0.19 -0.2 445,686 + Synpcc7942_0457 0.20 +1.7 445,689 - Synpcc7942_0457 0.21 -2.9 445,691 - Synpcc7942_0457 0.21 -1.4 445,755 + Synpcc7942_0457 0.31 +1.1 445,763 - Synpcc7942_0457 0.33 +0.5 445,771 + Synpcc7942_0457 0.34 +0.9 445,783 + Synpcc7942_0457 0.36 +1.4 445,790 + Synpcc7942_0457 0.37 +3.1 445,798 - Synpcc7942_0457 0.38 +2.0 445,799 - Synpcc7942_0457 0.38 +1.1 445,806 + Synpcc7942_0457 0.39 +1.2 445,814 - Synpcc7942_0457 0.41 +1.3 445,832 + Synpcc7942_0457 0.44 +0.7 445,874 - Synpcc7942_0457 0.50 +0.4 445,897 + Synpcc7942_0457 0.54 -0.8 445,900 - Synpcc7942_0457 0.55 -3.8 445,933 + Synpcc7942_0457 0.60 +1.1 445,933 + Synpcc7942_0457 0.60 +0.4 445,933 + Synpcc7942_0457 0.60 -1.1 445,938 + Synpcc7942_0457 0.61 -1.2 445,941 - Synpcc7942_0457 0.61 +4.0 445,951 - Synpcc7942_0457 0.63 +1.9 445,988 - Synpcc7942_0457 0.69 +0.9 446,071 + Synpcc7942_0457 0.82 -0.3 446,120 + +0.9 446,169 + -1.1 446,169 + -0.3 446,185 + -0.6 446,200 - -0.9 446,234 + +0.1 446,242 - -2.2 446,287 + -0.1 446,318 - fghA Synpcc7942_0458 0.12 -3.7 446,324 - fghA Synpcc7942_0458 0.13 -0.1 446,337 - fghA Synpcc7942_0458 0.15 -0.7 446,343 + fghA Synpcc7942_0458 0.15 -3.1 446,453 + fghA Synpcc7942_0458 0.28 -1.9 446,468 - fghA Synpcc7942_0458 0.30 -0.1 446,477 + fghA Synpcc7942_0458 0.31 -1.7 446,499 - fghA Synpcc7942_0458 0.34 -0.1 446,507 + fghA Synpcc7942_0458 0.35 -0.3 446,515 - fghA Synpcc7942_0458 0.36 -0.1 446,533 + fghA Synpcc7942_0458 0.38 -2.2 446,545 + fghA Synpcc7942_0458 0.39 -2.1 446,553 - fghA Synpcc7942_0458 0.40 -1.4 446,570 + fghA Synpcc7942_0458 0.42 +0.9 446,578 - fghA Synpcc7942_0458 0.43 -0.5 446,580 + fghA Synpcc7942_0458 0.44 -0.7 446,588 - fghA Synpcc7942_0458 0.45 -0.4 446,595 - fghA Synpcc7942_0458 0.45 -0.9 446,665 + fghA Synpcc7942_0458 0.54 -1.7 446,700 + fghA Synpcc7942_0458 0.58 -1.1 446,708 - fghA Synpcc7942_0458 0.59 -1.0 446,710 - fghA Synpcc7942_0458 0.59 -1.9 446,741 + fghA Synpcc7942_0458 0.63 -1.8 446,749 - fghA Synpcc7942_0458 0.64 -0.9 446,782 + fghA Synpcc7942_0458 0.68 -0.5 446,888 + fghA Synpcc7942_0458 0.80 +0.9 446,896 - fghA Synpcc7942_0458 0.81 +0.1 446,901 - fghA Synpcc7942_0458 0.82 -0.9 446,901 - fghA Synpcc7942_0458 0.82 -2.0 446,909 + fghA Synpcc7942_0458 0.83 +0.3 446,917 - fghA Synpcc7942_0458 0.84 -1.1 446,930 - fghA Synpcc7942_0458 0.85 -0.1 446,930 - fghA Synpcc7942_0458 0.85 -1.3 446,932 - fghA Synpcc7942_0458 0.86 -0.1 446,947 - fghA Synpcc7942_0458 0.87 +0.3 446,960 - fghA Synpcc7942_0458 0.89 +1.7 446,965 - fghA Synpcc7942_0458 0.90 -0.8 446,977 + -1.3 446,979 + -0.7 446,984 + -0.9 446,985 - +1.0 446,991 + +1.1 446,999 - -1.1 447,007 - +1.9 447,035 + -1.1 447,064 - -0.4 447,195 - Synpcc7942_0459 0.12 -2.5 447,203 + Synpcc7942_0459 0.13 -1.7 447,212 - Synpcc7942_0459 0.14 -1.5 447,219 - Synpcc7942_0459 0.15 -1.1 447,238 + Synpcc7942_0459 0.16 -1.7 447,238 + Synpcc7942_0459 0.16 -0.8 447,238 + Synpcc7942_0459 0.16 -1.1 447,238 + Synpcc7942_0459 0.16 +0.3 447,246 - Synpcc7942_0459 0.17 -1.7 447,259 + Synpcc7942_0459 0.18 -0.5 447,292 + Synpcc7942_0459 0.21 -1.9 447,327 + Synpcc7942_0459 0.24 -1.7 447,329 - Synpcc7942_0459 0.25 -1.1 447,342 + Synpcc7942_0459 0.26 -1.1 447,388 - Synpcc7942_0459 0.30 -3.2 447,413 + Synpcc7942_0459 0.32 -1.9 447,450 - Synpcc7942_0459 0.35 -1.4 447,474 + Synpcc7942_0459 0.38 -1.8 447,475 + Synpcc7942_0459 0.38 -2.1 447,560 - Synpcc7942_0459 0.45 +0.5 447,577 - Synpcc7942_0459 0.47 +1.6 447,579 + Synpcc7942_0459 0.47 -0.1 447,579 + Synpcc7942_0459 0.47 -1.7 447,579 + Synpcc7942_0459 0.47 -0.7 447,587 - -2.1 447,587 - Synpcc7942_0459 0.48 -0.1 447,627 + Synpcc7942_0459 0.51 -1.3 447,627 + Synpcc7942_0459 0.51 -1.4 447,627 + Synpcc7942_0459 0.51 +1.0 447,627 + Synpcc7942_0459 0.51 -2.1 447,627 + Synpcc7942_0459 0.51 -2.1 447,635 - Synpcc7942_0459 0.52 -1.7 447,676 + Synpcc7942_0459 0.56 -2.1 447,677 + Synpcc7942_0459 0.56 -1.5 447,678 - Synpcc7942_0459 0.56 +0.2 447,683 - Synpcc7942_0459 0.56 +0.2 447,684 - Synpcc7942_0459 0.56 +0.6 447,689 - Synpcc7942_0459 0.57 -0.1 447,732 + Synpcc7942_0459 0.61 -2.1 447,733 + Synpcc7942_0459 0.61 -2.9 447,747 + Synpcc7942_0459 0.62 -1.1 447,765 + Synpcc7942_0459 0.64 -0.9 447,773 - Synpcc7942_0459 0.65 -2.7 447,788 + Synpcc7942_0459 0.66 -1.9 447,796 - Synpcc7942_0459 0.67 -0.7 447,813 + Synpcc7942_0459 0.68 -2.8 447,825 + Synpcc7942_0459 0.69 -0.3 447,825 + Synpcc7942_0459 0.69 -0.3 447,825 + Synpcc7942_0459 0.69 -0.8 447,825 + Synpcc7942_0459 0.69 -2.1 447,825 + Synpcc7942_0459 0.69 +0.5 447,825 + Synpcc7942_0459 0.69 -1.7 447,825 + Synpcc7942_0459 0.69 +0.9 447,833 - Synpcc7942_0459 0.70 -0.2 447,833 - Synpcc7942_0459 0.70 +2.9 447,833 - Synpcc7942_0459 0.70 -0.5 447,833 - Synpcc7942_0459 0.70 +0.1 447,833 - Synpcc7942_0459 0.70 -3.1 447,833 - Synpcc7942_0459 0.70 -1.5 447,854 + Synpcc7942_0459 0.72 +0.9 447,861 - Synpcc7942_0459 0.72 -0.3 447,868 + Synpcc7942_0459 0.73 +0.9 447,893 + Synpcc7942_0459 0.75 +0.1 447,911 + Synpcc7942_0459 0.77 +1.9 447,939 + Synpcc7942_0459 0.79 +0.9 447,939 + Synpcc7942_0459 0.79 -3.1 447,940 + Synpcc7942_0459 0.80 +0.3 447,963 + Synpcc7942_0459 0.82 -0.8 447,992 - Synpcc7942_0459 0.84 -1.1 448,028 + Synpcc7942_0459 0.87 -1.1 448,036 - Synpcc7942_0459 0.88 -1.7 448,036 - Synpcc7942_0459 0.88 +1.5 448,042 + Synpcc7942_0459 0.89 -0.5 448,050 - Synpcc7942_0459 0.89 -2.4
Or see this region's nucleotide sequence