Experiment: Doxycycline hyclate 0.00078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ribD and Synpcc7942_0204 overlap by 8 nucleotides Synpcc7942_0204 and Synpcc7942_0205 are separated by 151 nucleotides Synpcc7942_0205 and Synpcc7942_0206 are separated by 147 nucleotides
Synpcc7942_0203: ribD - 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 204,483 to 205,589
ribD
Synpcc7942_0204: Synpcc7942_0204 - hypothetical protein, at 205,582 to 206,046
_0204
Synpcc7942_0205: Synpcc7942_0205 - nicotinamide-nucleotide adenylyltransferase, at 206,198 to 207,214
_0205
Synpcc7942_0206: Synpcc7942_0206 - hypothetical protein, at 207,362 to 208,750
_0206
Position (kb) 206
207
208 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 205.584 kb on + strand at 205.585 kb on + strand at 205.641 kb on + strand, within Synpcc7942_0204 at 205.649 kb on - strand, within Synpcc7942_0204 at 205.652 kb on + strand, within Synpcc7942_0204 at 205.663 kb on + strand, within Synpcc7942_0204 at 205.676 kb on + strand, within Synpcc7942_0204 at 205.703 kb on - strand, within Synpcc7942_0204 at 205.719 kb on + strand, within Synpcc7942_0204 at 205.732 kb on - strand, within Synpcc7942_0204 at 205.752 kb on + strand, within Synpcc7942_0204 at 205.789 kb on + strand, within Synpcc7942_0204 at 205.789 kb on + strand, within Synpcc7942_0204 at 205.803 kb on + strand, within Synpcc7942_0204 at 205.872 kb on - strand, within Synpcc7942_0204 at 205.893 kb on + strand, within Synpcc7942_0204 at 205.913 kb on - strand, within Synpcc7942_0204 at 205.939 kb on - strand, within Synpcc7942_0204 at 205.956 kb on + strand, within Synpcc7942_0204 at 205.966 kb on + strand, within Synpcc7942_0204 at 205.966 kb on + strand, within Synpcc7942_0204 at 205.992 kb on + strand at 206.000 kb on - strand at 206.003 kb on + strand at 206.072 kb on - strand at 206.084 kb on + strand at 206.092 kb on - strand at 206.133 kb on - strand at 206.164 kb on - strand at 206.263 kb on + strand at 206.371 kb on + strand, within Synpcc7942_0205 at 206.446 kb on - strand, within Synpcc7942_0205 at 206.550 kb on - strand, within Synpcc7942_0205 at 206.608 kb on - strand, within Synpcc7942_0205 at 206.637 kb on + strand, within Synpcc7942_0205 at 206.686 kb on + strand, within Synpcc7942_0205 at 206.772 kb on - strand, within Synpcc7942_0205 at 206.906 kb on + strand, within Synpcc7942_0205 at 207.229 kb on + strand at 207.229 kb on + strand at 207.229 kb on + strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.261 kb on + strand at 207.300 kb on + strand at 207.300 kb on + strand at 207.317 kb on - strand at 207.333 kb on + strand at 207.393 kb on + strand at 207.413 kb on - strand at 207.427 kb on + strand at 207.512 kb on - strand, within Synpcc7942_0206 at 207.530 kb on + strand, within Synpcc7942_0206 at 207.568 kb on + strand, within Synpcc7942_0206 at 207.576 kb on + strand, within Synpcc7942_0206 at 207.586 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.668 kb on - strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.686 kb on + strand, within Synpcc7942_0206 at 207.692 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.725 kb on - strand, within Synpcc7942_0206 at 207.727 kb on + strand, within Synpcc7942_0206 at 207.741 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.763 kb on - strand, within Synpcc7942_0206 at 207.766 kb on + strand, within Synpcc7942_0206 at 207.783 kb on - strand, within Synpcc7942_0206 at 207.789 kb on - strand, within Synpcc7942_0206 at 207.899 kb on + strand, within Synpcc7942_0206 at 207.980 kb on - strand, within Synpcc7942_0206 at 207.989 kb on - strand, within Synpcc7942_0206 at 208.082 kb on - strand, within Synpcc7942_0206 at 208.146 kb on + strand, within Synpcc7942_0206 at 208.182 kb on - strand, within Synpcc7942_0206
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.00078125 mg/ml remove 205,584 + +0.3 205,585 + -0.4 205,641 + Synpcc7942_0204 0.13 -2.3 205,649 - Synpcc7942_0204 0.14 -1.1 205,652 + Synpcc7942_0204 0.15 -0.9 205,663 + Synpcc7942_0204 0.17 +0.5 205,676 + Synpcc7942_0204 0.20 -0.9 205,703 - Synpcc7942_0204 0.26 +0.1 205,719 + Synpcc7942_0204 0.29 -0.4 205,732 - Synpcc7942_0204 0.32 +1.5 205,752 + Synpcc7942_0204 0.37 +1.1 205,789 + Synpcc7942_0204 0.45 -2.1 205,789 + Synpcc7942_0204 0.45 +1.0 205,803 + Synpcc7942_0204 0.48 +1.1 205,872 - Synpcc7942_0204 0.62 +0.5 205,893 + Synpcc7942_0204 0.67 -1.1 205,913 - Synpcc7942_0204 0.71 -0.1 205,939 - Synpcc7942_0204 0.77 +2.1 205,956 + Synpcc7942_0204 0.80 +1.0 205,966 + Synpcc7942_0204 0.83 -0.9 205,966 + Synpcc7942_0204 0.83 -0.5 205,992 + +0.5 206,000 - -1.0 206,003 + +0.1 206,072 - +1.9 206,084 + -0.6 206,092 - -1.7 206,133 - -1.7 206,164 - +0.6 206,263 + -1.7 206,371 + Synpcc7942_0205 0.17 -2.9 206,446 - Synpcc7942_0205 0.24 -0.1 206,550 - Synpcc7942_0205 0.35 -2.9 206,608 - Synpcc7942_0205 0.40 -1.4 206,637 + Synpcc7942_0205 0.43 -2.0 206,686 + Synpcc7942_0205 0.48 -3.8 206,772 - Synpcc7942_0205 0.56 -4.2 206,906 + Synpcc7942_0205 0.70 -1.8 207,229 + -2.5 207,229 + +0.3 207,229 + -0.2 207,237 - +1.0 207,237 - -1.7 207,237 - +0.5 207,261 + +0.9 207,300 + +0.3 207,300 + +1.0 207,317 - -0.5 207,333 + +1.6 207,393 + +1.5 207,413 - +2.7 207,427 + -0.6 207,512 - Synpcc7942_0206 0.11 -1.5 207,530 + Synpcc7942_0206 0.12 -0.7 207,568 + Synpcc7942_0206 0.15 +0.8 207,576 + Synpcc7942_0206 0.15 -1.4 207,586 + Synpcc7942_0206 0.16 +1.9 207,659 + Synpcc7942_0206 0.21 -0.8 207,659 + Synpcc7942_0206 0.21 -0.4 207,659 + Synpcc7942_0206 0.21 +0.6 207,667 - Synpcc7942_0206 0.22 -0.6 207,667 - Synpcc7942_0206 0.22 +0.4 207,668 - Synpcc7942_0206 0.22 +1.9 207,672 + Synpcc7942_0206 0.22 -0.7 207,672 + Synpcc7942_0206 0.22 +2.9 207,672 + Synpcc7942_0206 0.22 +2.5 207,686 + Synpcc7942_0206 0.23 -1.1 207,692 + Synpcc7942_0206 0.24 +2.7 207,717 + Synpcc7942_0206 0.26 -2.6 207,717 + Synpcc7942_0206 0.26 -0.8 207,725 - Synpcc7942_0206 0.26 +0.3 207,727 + Synpcc7942_0206 0.26 +2.9 207,741 + Synpcc7942_0206 0.27 -0.8 207,753 + Synpcc7942_0206 0.28 +1.5 207,753 + Synpcc7942_0206 0.28 +1.2 207,761 - Synpcc7942_0206 0.29 +0.5 207,761 - Synpcc7942_0206 0.29 -0.3 207,763 - Synpcc7942_0206 0.29 +1.5 207,766 + Synpcc7942_0206 0.29 +0.6 207,783 - Synpcc7942_0206 0.30 -2.1 207,789 - Synpcc7942_0206 0.31 +0.9 207,899 + Synpcc7942_0206 0.39 +1.2 207,980 - Synpcc7942_0206 0.44 +1.5 207,989 - Synpcc7942_0206 0.45 -0.4 208,082 - Synpcc7942_0206 0.52 +1.5 208,146 + Synpcc7942_0206 0.56 +1.6 208,182 - Synpcc7942_0206 0.59 +0.0
Or see this region's nucleotide sequence