Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_814 and Pf1N1B4_815 overlap by 4 nucleotides Pf1N1B4_815 and Pf1N1B4_816 are separated by 161 nucleotides Pf1N1B4_816 and Pf1N1B4_817 are separated by 41 nucleotides
Pf1N1B4_814 - Transcriptional regulator, PadR family, at 932,291 to 932,872
_814
Pf1N1B4_815 - iron-chelator utilization protein, at 932,869 to 933,666
_815
Pf1N1B4_816 - Integral membrane protein, at 933,828 to 934,433
_816
Pf1N1B4_817 - FIG00955104: hypothetical protein, at 934,475 to 934,705
_817
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 932.108 kb on + strand at 932.146 kb on + strand at 932.148 kb on + strand at 932.148 kb on + strand at 932.148 kb on + strand at 932.251 kb on + strand at 932.267 kb on + strand at 932.460 kb on - strand, within Pf1N1B4_814 at 932.502 kb on - strand, within Pf1N1B4_814 at 932.525 kb on + strand, within Pf1N1B4_814 at 932.626 kb on - strand, within Pf1N1B4_814 at 932.809 kb on + strand, within Pf1N1B4_814 at 932.810 kb on - strand, within Pf1N1B4_814 at 932.989 kb on - strand, within Pf1N1B4_815 at 932.989 kb on - strand, within Pf1N1B4_815 at 932.989 kb on - strand, within Pf1N1B4_815 at 933.044 kb on + strand, within Pf1N1B4_815 at 933.044 kb on + strand, within Pf1N1B4_815 at 933.044 kb on + strand, within Pf1N1B4_815 at 933.045 kb on - strand, within Pf1N1B4_815 at 933.045 kb on - strand, within Pf1N1B4_815 at 933.045 kb on - strand, within Pf1N1B4_815 at 933.045 kb on - strand, within Pf1N1B4_815 at 933.045 kb on - strand, within Pf1N1B4_815 at 933.145 kb on + strand, within Pf1N1B4_815 at 933.146 kb on - strand, within Pf1N1B4_815 at 933.146 kb on - strand, within Pf1N1B4_815 at 933.160 kb on + strand, within Pf1N1B4_815 at 933.310 kb on + strand, within Pf1N1B4_815 at 933.310 kb on + strand, within Pf1N1B4_815 at 933.311 kb on - strand, within Pf1N1B4_815 at 933.311 kb on - strand at 933.311 kb on - strand at 933.311 kb on - strand, within Pf1N1B4_815 at 933.535 kb on + strand, within Pf1N1B4_815 at 933.535 kb on + strand, within Pf1N1B4_815 at 933.536 kb on - strand, within Pf1N1B4_815 at 933.584 kb on + strand, within Pf1N1B4_815 at 933.664 kb on + strand at 933.694 kb on - strand at 933.958 kb on + strand, within Pf1N1B4_816 at 934.006 kb on + strand, within Pf1N1B4_816 at 934.007 kb on - strand, within Pf1N1B4_816 at 934.007 kb on - strand, within Pf1N1B4_816 at 934.007 kb on - strand at 934.007 kb on - strand, within Pf1N1B4_816 at 934.018 kb on + strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.055 kb on + strand, within Pf1N1B4_816 at 934.056 kb on - strand, within Pf1N1B4_816 at 934.082 kb on - strand, within Pf1N1B4_816 at 934.177 kb on + strand, within Pf1N1B4_816 at 934.178 kb on - strand, within Pf1N1B4_816 at 934.375 kb on - strand at 934.375 kb on - strand at 934.375 kb on - strand at 934.375 kb on - strand at 934.379 kb on - strand at 934.379 kb on - strand at 934.379 kb on - strand at 934.390 kb on + strand at 934.390 kb on + strand at 934.391 kb on - strand at 934.391 kb on - strand at 934.509 kb on + strand, within Pf1N1B4_817 at 934.510 kb on - strand, within Pf1N1B4_817 at 934.573 kb on + strand, within Pf1N1B4_817 at 934.574 kb on - strand at 934.632 kb on + strand, within Pf1N1B4_817 at 934.632 kb on + strand, within Pf1N1B4_817 at 934.632 kb on + strand, within Pf1N1B4_817 at 934.633 kb on - strand, within Pf1N1B4_817
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 932,108 + +0.9 932,146 + -0.1 932,148 + +0.5 932,148 + +1.9 932,148 + +0.4 932,251 + -2.1 932,267 + -0.1 932,460 - Pf1N1B4_814 0.29 +3.3 932,502 - Pf1N1B4_814 0.36 -2.6 932,525 + Pf1N1B4_814 0.40 -0.5 932,626 - Pf1N1B4_814 0.58 -0.1 932,809 + Pf1N1B4_814 0.89 -3.1 932,810 - Pf1N1B4_814 0.89 -0.1 932,989 - Pf1N1B4_815 0.15 +1.8 932,989 - Pf1N1B4_815 0.15 +0.5 932,989 - Pf1N1B4_815 0.15 +2.5 933,044 + Pf1N1B4_815 0.22 -2.1 933,044 + Pf1N1B4_815 0.22 -0.9 933,044 + Pf1N1B4_815 0.22 +0.9 933,045 - Pf1N1B4_815 0.22 -1.1 933,045 - Pf1N1B4_815 0.22 +1.1 933,045 - Pf1N1B4_815 0.22 -1.1 933,045 - Pf1N1B4_815 0.22 +1.2 933,045 - Pf1N1B4_815 0.22 -1.1 933,145 + Pf1N1B4_815 0.35 +1.5 933,146 - Pf1N1B4_815 0.35 +0.9 933,146 - Pf1N1B4_815 0.35 -1.6 933,160 + Pf1N1B4_815 0.36 -0.1 933,310 + Pf1N1B4_815 0.55 +0.1 933,310 + Pf1N1B4_815 0.55 -2.1 933,311 - Pf1N1B4_815 0.55 -0.6 933,311 - -1.6 933,311 - +0.9 933,311 - Pf1N1B4_815 0.55 +0.9 933,535 + Pf1N1B4_815 0.83 +1.5 933,535 + Pf1N1B4_815 0.83 +0.4 933,536 - Pf1N1B4_815 0.84 +1.7 933,584 + Pf1N1B4_815 0.90 -1.6 933,664 + -0.1 933,694 - +0.4 933,958 + Pf1N1B4_816 0.21 -2.1 934,006 + Pf1N1B4_816 0.29 -0.1 934,007 - Pf1N1B4_816 0.30 +3.4 934,007 - Pf1N1B4_816 0.30 -0.1 934,007 - -0.1 934,007 - Pf1N1B4_816 0.30 +0.2 934,018 + Pf1N1B4_816 0.31 -1.4 934,019 - Pf1N1B4_816 0.32 +1.5 934,019 - Pf1N1B4_816 0.32 +0.9 934,019 - Pf1N1B4_816 0.32 +1.7 934,055 + Pf1N1B4_816 0.37 -1.9 934,056 - Pf1N1B4_816 0.38 -0.8 934,082 - Pf1N1B4_816 0.42 -1.1 934,177 + Pf1N1B4_816 0.58 -0.6 934,178 - Pf1N1B4_816 0.58 +0.7 934,375 - -1.1 934,375 - +1.2 934,375 - +1.1 934,375 - +0.1 934,379 - +0.9 934,379 - +0.5 934,379 - +1.2 934,390 + +2.2 934,390 + +0.8 934,391 - -0.4 934,391 - -2.7 934,509 + Pf1N1B4_817 0.15 +0.4 934,510 - Pf1N1B4_817 0.15 -0.7 934,573 + Pf1N1B4_817 0.42 -1.7 934,574 - -0.1 934,632 + Pf1N1B4_817 0.68 +0.1 934,632 + Pf1N1B4_817 0.68 +2.2 934,632 + Pf1N1B4_817 0.68 -2.7 934,633 - Pf1N1B4_817 0.68 +0.8
Or see this region's nucleotide sequence